PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005021t1
Common NameTCM_005021
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 740aa    MW: 80122.5 Da    PI: 6.4739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005021t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-162468147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Thecc1EG005021t1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.98E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.0911973IPR017930Myb domain
TIGRFAMsTIGR015578.0E-172271IPR006447Myb domain, plants
SMARTSM007177.3E-132371IPR001005SANT/Myb domain
PfamPF002493.0E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-82464IPR009057Homeodomain-like
CDDcd001671.41E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTGA ATTAQVGAKD  120
GKSETPLSSL RCKQVLDLEK EPLPERPNGD EKPINLKDNQ DDSCSEVVTL LHEANCSSVS  180
SVNKNSIPTS AALRNSCTFR EFVPSLKETI QDNGTSKASN LDNSCTSHEK AAQGQKKDDV  240
DGGLRADETQ ATQNYPRHVA VHVLDGSLGT GAQNPSLDMP FQDSVFHPMG DVHGQTNLFA  300
NPAASATTEH QNNAPRSTHQ AFPTFHPPFT HVCPNPEDYR SFLHVSSTFS SLIASTLLQN  360
PAAHAAASFA ATFWPYANVD SSADSPACSQ GGFPSRQMNP APSMAAIAAA TVAAATAWWA  420
AHGLLPLCAP LHTGFTCALA SAAAVPPMDN EQAPATKMER KDNNDQDLSM QDQQLDPEYS  480
EALQAQHSAS KSPTSSSSDS EACGDAKVNT GVKAADDEKA AAVTEPQDAN KTKNRKQVDR  540
SSCGSNTPSS SEVETDVLEK YEKDKEDAKG ADANHPQVEC CNRRGRSCSN PSDSWKEVSE  600
GGRLAFQALF SREVLPQSFS PPHDGKNKGQ QKDKVEDDKQ NSDEKDGATS ALDLNSQTVR  660
SCSYRQGVEK NGLSRGEDIV GEGLLTIGLE HAKLKARRTG FKPYKRCSVE AKENKVMNAG  720
SQGEEKGPKR IRLEGEAST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051405.20.0PREDICTED: protein LHY isoform X2
TrEMBLA0A061DT310.0A0A061DT31_THECC; Homeodomain-like superfamily protein isoform 1
STRINGEOX955620.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-138MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]