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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thecc1EG004872t2 |
| Common Name | TCM_004872 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family |
MYB_related |
| Protein Properties |
Length: 451aa MW: 50475.4 Da PI: 9.4818 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG004872t2 | genome | CGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 22.9 | 2e-07 | 129 | 171 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
WT+eE ++l d+++++ + + Ia ++++ Rt +++k+r+++
Thecc1EG004872t2 129 VWTKEETDQLFDLCERFDLR-FIVIADRFPTFRTVEELKDRYYS 171
6*******************.*********************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0000812 | Cellular Component | Swr1 complex |
| GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MDAKDILGLP KTPLPITQEK KPRPQKDSQR KPDGISREVY ALTGGLAPLM PSIDASQLKR 60
RPPSDEKITW QWLPFTSSAR KDDLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVIKYTDEE 120
YEKYLTDPVW TKEETDQLFD LCERFDLRFI VIADRFPTFR TVEELKDRYY SVSRAILIAR 180
APSPGEVAGH PLVKEPYNVS QETERKRALS MVLSQTKQQE RKDAEVLAEA KRIAESRMAA 240
QGAEEPDLPV TSDIGPESVE RAIGHGDTIS PSSVQVPSAA VAPSTSIMAD NASTLASLRM 300
LRVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLEVNL KPKVPTKAVC AEHLELRKEI 360
LTLLNLQKQL QYKEAEGSSF RDGSYGDMPG TPKRSHRVVD QDRTFVPDAI SFGGERAGKR 420
EQKRKGPGRV SETPSSPAHK RPRKMKASDL *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 7e-21 | 101 | 185 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 7e-21 | 101 | 185 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
