PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004576t1

Common Name

TCM_004576

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 176aa MW: 19730.9 Da PI: 6.5212

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004576t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	172.5	4.7e-54	31	127	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 v+eqd++lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf++y+e+lk yl++yr+ Thecc1EG004576t1 31 VKEQDQLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYAEQLKRYLHRYRDQ 123 589****************************************************************************************** PP NF-YB 94 egek 97 ege+ Thecc1EG004576t1 124 EGER 127 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.6E-53	29	144	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-39	34	143	IPR009072	Histone-fold
Pfam	PF00808	7.4E-28	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.8E-20	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	9.8E-20	84	102	No hit	No description
PRINTS	PR00615	9.8E-20	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MTDKIGIDSD REDHSYNFAG AGGVSGEDGI VKEQDQLLPI ANVGRIMKQI LPPNAKISKE 60 AKETMQECVS EFISFVTGEA SDKCHKEKRK TVNGDDICWA LATLGFDNYA EQLKRYLHRY 120 RDQEGERVNQ NRAGNHEEKQ ETSNYRSELP RRSAVPSNPL KFNAIDRSSS LSRPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-44	31	122	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-44	31	122	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050837.2	1e-129	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O82248	9e-61	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A061DQ99	1e-128	A0A061DQ99_THECC; Nuclear transcription factor Y subunit B-5
STRING	EOX94994	1e-129	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	4e-63	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Thecc1EG004576t1
Entrez Gene	18613506

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]