PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004558t1
Common NameTCM_004558
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 477aa    MW: 51104.4 Da    PI: 8.9183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004558t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114975127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++ + C +++rtG+C yG+rC+++H++
  Thecc1EG004558t1 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75
                      57899********************96 PP
2zf-CCCH40.16e-1394120127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+f+++tGtCk+G++CkF+H++
  Thecc1EG004558t1  94 PGEPACQFYLKTGTCKFGASCKFHHPK 120
                       57899********************96 PP
3zf-CCCH36.67.5e-12141166227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tG+Ck+G +CkF+H++
  Thecc1EG004558t1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
                       7899********************97 PP
4zf-CCCH36.58.3e-12297323127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++++rtG Ck+G++C+++H++
  Thecc1EG004558t1 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323
                       5799*********************96 PP
5zf-CCCH36.39.4e-12344369227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +  +C+f++++G+Ck+G++CkF H++
  Thecc1EG004558t1 344 GVQPCSFYLQNGHCKFGSTCKFDHPM 369
                       6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3144876IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-74875IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45475IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.01493121IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-499120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817296324IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6296323IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5302323IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366342370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6344373IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5346368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MELYGRNPGR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GTESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK  120
HGGGSFSHVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY  180
QPVQSPSVPM PEQYGGASTS VRVARPPLLP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYSSVPSS TGPASSNQKE QTFPERPGEP  300
ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG  360
STCKFDHPMG TMRYSPSASS LIDMPVAPYP VGSLLATLAP SSSSSELRPE LISGSKKDSY  420
LSRIPSSAST SSSSVGLIFS QTGSVPLSDL QLSSQSSVPL SSSRSTRQGG EVRRSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050814.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A061DS910.0A0A061DS91_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGEOX949710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]