PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 304aa MW: 31796.1 Da PI: 6.5243

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004217t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	7.9e-10	152	196	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Thecc1EG004217t1 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 196 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-15	145	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-15	149	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	152	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MANNPNEAPA DDFLEQILGL PNFAPTEAGL PGPDGGLAGT AAAAGAPMLL QLSSGDGAGH 60 LAAIGGGGGG AFHGQVFPLG LSLEQGKGGF LKPQEASGSG KRFRDDVVDG RASSVKNVFH 120 GQPMQATVAA APHPPSMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT 180 DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPLSSVEDES GEGGRNQPAW 240 EKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA TAIYHTQPPD TSPIVKPEAN 300 PPA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017983588.1	0.0	PREDICTED: transcription factor UNE12
Swissprot	O22768	1e-143	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A061DR61	0.0	A0A061DR61_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRING	EOX94586	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-126	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG004217t1
Entrez Gene	18613240

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]