PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG003125t1
Common NameTCM_003125
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 540aa    MW: 58332.4 Da    PI: 7.2526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG003125t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39.1e-16346392455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Thecc1EG003125t1 346 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 392
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20340408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-17345396No hitNo description
Gene3DG3DSA:4.10.280.101.0E-20346400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-13346392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MNHCVPDFEM GDDYSIPSSS SLTRSKKPPM PEDEIMELLW QNGQVVVQSQ NQRSFKKSPP  60
FKFHDAHQSA PKEIRSSPSH HQHHQQQQQQ SVTDHLFMQE DEMASWLHYP LNDANFDHDF  120
CADLLYPSSS AAAAANPCVT STATAAPPPL GRVSQVSASA AASAPRPPIP PARRNELEST  180
RIQNFVHFSR HKTARVEQSG PSNSKSVVRE STVVDSSETP AMAPDSRGSQ AVPSNTEAAS  240
GGNNNNASAT VSAAAVASTQ SAGVSVGATK DNLATCEVTV TSSPGGSSAS AEPATQKAAP  300
AEDRKRKGRE PDDAECHSED AEFESADTKK QTRGSTSTKR SRAAEVHNLS ERRRRDRINE  360
KMRALQELIP RCNKSDKASM LDEAIEYLKS LQLQVQMMSM GCGMVPMMFP GVQQYMPTMG  420
MGIGMGMGMD MGISRPMMPF PNVLAGSALP TPAAAAHLGP RFPLPAFHMP LPVPAPDPSR  480
IQPNNQSEAM LNTLGMQNPT QPRAPNFADP YQQYLGLQQM QLPPLQSQGM AQPSSRKPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049883.20.0PREDICTED: transcription factor PIF1 isoform X2
RefseqXP_017983598.10.0PREDICTED: transcription factor PIF1 isoform X1
TrEMBLA0A061DMV90.0A0A061DMV9_THECC; Phytochrome interacting factor 3-like 5, putative isoform 1
STRINGEOX940410.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-57phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]