PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG002835t1 | ||||||||
Common Name | TCM_002835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26117.5 Da PI: 10.6859 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.9 | 9.3e-12 | 109 | 150 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ Thecc1EG002835t1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-6 | 108 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-4 | 108 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-8 | 109 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-6 | 111 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MVSLRRRKLL GLCSGKSSFL TPLPRFFDNG HAPENSSQNA KSISVHPMPS DFTGHIHGKS 60 IAKVGSGSPN VSGSGSSKEH HNQPFPGQPI KRRKRHRRKH VQNQEPCLMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEEEKQELRK FKWDEFLAYT 180 RRSITNKKYK RRLGAGPQKR SEPAIENSDW DSKQGVNSLS ASEEAGPDSS AS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017985312.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_017985316.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_017985322.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_017985325.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Swissprot | Q56XP9 | 2e-46 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A061DN51 | 1e-172 | A0A061DN51_THECC; Integrase-type DNA-binding superfamily protein isoform 1 | ||||
STRING | EOX93857 | 1e-173 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6189 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-50 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG002835t1 |
Entrez Gene | 18612726 |
Publications ? help Back to Top | |||
---|---|---|---|
|