PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG002653t2 | ||||||||
Common Name | TCM_002653 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 217aa MW: 24934.3 Da PI: 8.7962 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86 | 5.7e-27 | 51 | 140 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + +++r++ r gCka++ vk+ek+gkw+vt++++eHnH+l Thecc1EG002653t2 51 KFYVEYARQVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVVTRFVKEHNHPLI 140 6**********************************************9****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.9E-25 | 51 | 140 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MYRSTKLMHV DLDKEVGTVD SSEEKTAEPE GREILEPYVG MEFESEDDAR KFYVEYARQV 60 GFVVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNHKGTFGP DKKPRPSARE GCKATILVKM 120 EKTGKWVVTR FVKEHNHPLI ATANGFSTTG DKDKKIEELS MELAHQEQLC SAYREKLFTF 180 MNNVEEQTEE LSSKIQVIVD NVRKLESETQ RFSHRR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049566.1 | 1e-161 | PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
TrEMBL | A0A061DUS5 | 1e-160 | A0A061DUS5_THECC; Far-red impaired responsive family protein isoform 2 | ||||
STRING | EOX93722 | 1e-151 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 3e-75 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG002653t2 |
Entrez Gene | 18612617 |
Publications ? help Back to Top | |||
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