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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG002514t1 | ||||||||
Common Name | TCM_002514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 135aa MW: 14798.8 Da PI: 6.0924 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 38.9 | 2e-12 | 101 | 125 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt+eLH+ Fv+av+qLGG++ Thecc1EG002514t1 101 KPRLRWTHELHAYFVDAVNQLGGPH 125 79*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-10 | 99 | 126 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MAEIVSEMQS VLMENNVPSQ NYDELKRVVL GKQMAGPRTG ANGNTQDDQQ LQGGDNNTLL 60 ALQEIQGPST PVKINGNHVV GNEVVEKVKE KPKIMVTNDL KPRLRWTHEL HAYFVDAVNQ 120 LGGPHSQCSF PLIL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491750.1 | 1e-40 | PREDICTED: uncharacterized protein LOC105803878 | ||||
Refseq | XP_017634379.1 | 5e-41 | PREDICTED: uncharacterized protein LOC108476618 | ||||
TrEMBL | A0A061DNI7 | 2e-94 | A0A061DNI7_THECC; Uncharacterized protein | ||||
STRING | EOX93626 | 4e-95 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21949 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 1e-10 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG002514t1 |
Entrez Gene | 18612547 |
Publications ? help Back to Top | |||
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