PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002458t5
Common NameTCM_002458
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 377aa    MW: 41089.6 Da    PI: 4.705
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002458t5genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.8e-06444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      +C+ +++++   +C+++  +lC +C  + H+       H++
  Thecc1EG002458t5  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                      7*****************************65677777765 PP
2zf-B_box20.78.5e-074689441
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                        C++++++++   C + +  lC++C   +H g       H++++
  Thecc1EG002458t5 46 LLCERCNSQPAFVRCAEERISLCQNCDWMGH-GtstsnstHKRQT 89
                      57*****************************.5578888888766 PP
3CCT63.18.5e-22319362144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Thecc1EG002458t5 319 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 362
                       889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
CDDcd000211.34E-6447No hitNo description
SMARTSM003365.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7454390IPR000315B-box-type zinc finger
CDDcd000212.66E-44790No hitNo description
SMARTSM003363.84890IPR000315B-box-type zinc finger
PfamPF062031.8E-16319361IPR010402CCT domain
PROSITE profilePS5101715.418319361IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
AEERISLCQN CDWMGHGTST SNSTHKRQTI NCYSGCPSAA ELSSVWSFVL ESPSAGESAC  120
EQELGLMSIT ENAERTSWDP TENTISQNGT GVAEVNDDLD ADKGSSWGGS ASVPELRSAP  180
RLLDQPAGST DLLPKLCCPQ TKCPGLCEDD LYADFNMDEV DLNLENYEEL FGVTLNHSEE  240
LFENGGIDSL FGTKDMSAAD SNCQGAVAAE AHSSLSFSGL TGESSAGDYQ DCGASSMLLM  300
GEPPWCPPCN ENSFSSATRS DAVMRYKEKK KTRKFEKRVR YASRKARADV RKRVKGRFVK  360
AGDAYDYDPL NQTRSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049418.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X2
RefseqXP_007049419.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X2
RefseqXP_017982089.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9SSE51e-146COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A061DNC00.0A0A061DNC0_THECC; B-box type zinc finger protein with CCT domain isoform 4
STRINGEOX935730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-121CONSTANS-like 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]