PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002360t1
Common NameTCM_002360
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SAP
Protein Properties Length: 509aa    MW: 56442.6 Da    PI: 6.4657
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002360t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP79.54.7e-25180179
               SAP  1 mssssssssseseeg.seggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqv 79
                      msss sssss+s+++ ++g+ +g + +g++egp  +r+ra ne+wp Pf+e l +qvaidasrslGrlaaa alanvfq 
  Thecc1EG002360t1  1 MSSSPSSSSSSSSSSsEDGNGNGARRGGDFEGPLLTRRRANNEIWPGPFVEDLVVQVAIDASRSLGRLAAAAALANVFQA 80
                      6666555555554440444445556679**************************************************95 PP
2SAP6174.1e-18813350875455
               SAP  75 nvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGf 167
                       ++ +vcstw+a srsd lw+rlt+ iW rt+++++tWreeyiyrh+ta+nfr +r+ + tl+fdp+dvd+   +d l+Crcl+lsd++la+Gf
  Thecc1EG002360t1 133 HLDKVCSTWQATSRSDPLWNRLTSVIWGRTHRMHATWREEYIYRHQTAQNFRAGRSLHETLHFDPSDVDT---PDGLTCRCLTLSDTHLACGF 222
                       6679**************************************************************9988...689***************** PP

               SAP 168 adGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGl 260
                       adG+vrlfdl+trlhvstf+p+hrdr+GrfsravsGivi+d rl+fatldGdihvavidg  + +arra++G+v++dGalvdf+G++rWwvGl
  Thecc1EG002360t1 223 ADGTVRLFDLATRLHVSTFRPHHRDRFGRFSRAVSGIVITDPRLIFATLDGDIHVAVIDG--EPHARRAHMGNVLDDGALVDFTGCERWWVGL 313
                       ************************************************************..779**************************** PP

               SAP 261 yaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldas 353
                       yaGvpGrafhiWd++teelv+v  +ltdP avmGWhmltelte++Grvrvt++e+avaCtslr +v+dlrn++  l+++  rr liv s+da+
  Thecc1EG002360t1 314 YAGVPGRAFHIWDGNTEELVYVNATLTDPGAVMGWHMLTELTETIGRVRVTGQESAVACTSLRYMVLDLRNPEFPLHDRPCRRELIVNSFDAN 406
                       ********************************************************************************************* PP

               SAP 354 neayvvvdsrGvatvrrvenleevcrfrvrgaqrgvlgCvnggyalvyaggvlrvWeiekkeg..ylyslrervgevnalvaddrhvavsssd 444
                       +ea+++vd+rG a+vrrv++leevcrf+    q+ v+gC+n+gyal++a+gv+rvWeie++++   ly+++e +g vna+vad+rhva++s d
  Thecc1EG002360t1 407 DEAFIMVDNRGRAIVRRVDTLEEVCRFNTG--QGIVMGCMNLGYALLCAAGVIRVWEIEHEHDgrRLYTFSENIGVVNAMVADERHVAAASGD 497
                       ***************************998..89*************************9988889*************************** PP

               SAP 445 gtihlldfgaq 455
                       +tihl+dfgaq
  Thecc1EG002360t1 498 TTIHLWDFGAQ 508
                       *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813838.5E-6112178IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.6E-5114202No hitNo description
SMARTSM003207.9186231IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.3E-13206350IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.35E-15210278IPR017986WD40-repeat-containing domain
SuperFamilySSF509781.35E-15381504IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.3E-13405505IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.54467504IPR001680WD40 repeat
PROSITE patternPS006780491505IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSSSPSSSSS SSSSSSEDGN GNGARRGGDF EGPLLTRRRA NNEIWPGPFV EDLVVQVAID  60
ASRSLGRLAA AAALANVFQA PLQFLPQSSN NKSHCRSMLM ESFGWDQSKP ACAMPESTWS  120
PVLGIFKLMS TVHLDKVCST WQATSRSDPL WNRLTSVIWG RTHRMHATWR EEYIYRHQTA  180
QNFRAGRSLH ETLHFDPSDV DTPDGLTCRC LTLSDTHLAC GFADGTVRLF DLATRLHVST  240
FRPHHRDRFG RFSRAVSGIV ITDPRLIFAT LDGDIHVAVI DGEPHARRAH MGNVLDDGAL  300
VDFTGCERWW VGLYAGVPGR AFHIWDGNTE ELVYVNATLT DPGAVMGWHM LTELTETIGR  360
VRVTGQESAV ACTSLRYMVL DLRNPEFPLH DRPCRRELIV NSFDANDEAF IMVDNRGRAI  420
VRRVDTLEEV CRFNTGQGIV MGCMNLGYAL LCAAGVIRVW EIEHEHDGRR LYTFSENIGV  480
VNAMVADERH VAAASGDTTI HLWDFGAQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274999.10.0LOW QUALITY PROTEIN: transcriptional regulator STERILE APETALA
SwissprotQ9FKH11e-168SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A061DU180.0A0A061DU18_THECC; Transducin/WD40 repeat-like superfamily protein, putative
STRINGEOX934930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-166SAP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]