PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 528aa MW: 57729 Da PI: 6.943

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001913t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.6	8.1e-17	330	376	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Thecc1EG001913t2 330 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYMKSLQ 376 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.9E-20	323	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-20	323	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.451	326	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.23E-17	329	380	No hit	No description
Pfam	PF00010	2.9E-14	330	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-18	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0010161	Biological Process	red light signaling pathway
GO:0010244	Biological Process	response to low fluence blue light stimulus by blue low-fluence system
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0010928	Biological Process	regulation of auxin mediated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MNHCIPDWNF DQDNELVELL WQNGQVVLHS QTQRKHVQGQ KREQPTLRGG ATCLTYGNSS 60 HLINDDETTS WIQYPLEDSF EKEFCSNFFS ELPSSDPLET DDSKPNRQLD QHQPQFVKSS 120 SASPALHNMT VNSQQLNVSS AVPEFRGNPM PPPKFQFDSA QLNKSSEGLS KVCNFSPGAE 180 HTGVNSSGGN LIQREVKECS GMTVGSSYCG SNQVRNDIDF SRGSSNGFGT TTTGLSAGTS 240 KDDAPKAIVQ NETGKTETIE PTVTSSSGGS GSSLDRTCKQ STGVISSHKR KRRDGEDYEC 300 QSETAELQSA AGNKPTQRSG SSRRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD 360 KASMLDEAIE YMKSLQLQLQ VFQVMWMGSG MAPMMFPGIQ HYMSRMGIGM GPPPLPSIHN 420 PLHLSRVPVV DQSMSMAPSQ NQAATCQTQQ LNQVNYQHPM QNPTFSEQYA RFLGFHHMQT 480 ASQPMNMFGY GPQTTGQSPV VSAPSGSGPF TGGAATTNNT SPSGKMG*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MNHCIPDWNF DQDNELVELL WQNGQVVLHS QTQRKHVQGQ KREQPTLRGG ATCLTYGNSS  60
HLINDDETTS WIQYPLEDSF EKEFCSNFFS ELPSSDPLET DDSKPNRQLD QHQPQFVKSS  120
SASPALHNMT VNSQQLNVSS AVPEFRGNPM PPPKFQFDSA QLNKSSEGLS KVCNFSPGAE  180
HTGVNSSGGN LIQREVKECS GMTVGSSYCG SNQVRNDIDF SRGSSNGFGT TTTGLSAGTS  240
KDDAPKAIVQ NETGKTETIE PTVTSSSGGS GSSLDRTCKQ STGVISSHKR KRRDGEDYEC  300
QSETAELQSA AGNKPTQRSG SSRRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD  360
KASMLDEAIE YMKSLQLQLQ VFQVMWMGSG MAPMMFPGIQ HYMSRMGIGM GPPPLPSIHN  420
PLHLSRVPVV DQSMSMAPSQ NQAATCQTQQ LNQVNYQHPM QNPTFSEQYA RFLGFHHMQT  480
ASQPMNMFGY GPQTTGQSPV VSAPSGSGPF TGGAATTNNT SPSGKMG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	339	ERRRRD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00606	ChIP-seq	Transfer from AT2G43010	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048909.1	0.0	PREDICTED: transcription factor PIF4 isoform X3
TrEMBL	A0A061DLW4	0.0	A0A061DLW4_THECC; Phytochrome interacting factor 3-like 6, putative isoform 2
STRING	EOX93066	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3468	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	2e-55	phytochrome interacting factor 4

Link Out ? help Back to Top
Phytozome	Thecc1EG001913t2
Entrez Gene	18612195

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]