PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 602aa MW: 66880.9 Da PI: 6.2013

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001181t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.1	3e-20	8	58	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ ++ qvtfskRr +l KA+E+Sv Cd++va++ fs++g++ ++s Thecc1EG001181t1 8 KRIEDVTRCQVTFSKRRSSLLRKANEISVFCDVDVALVAFSPSGRVSKFCS 58 79*********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.035	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-19	1	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-16	2	22	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.41E-23	3	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-18	9	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-16	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-16	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MDNKPEMKRI EDVTRCQVTF SKRRSSLLRK ANEISVFCDV DVALVAFSPS GRVSKFCSRE 60 RIEDVLERYV KLAPDKRYQH VRCLEWKLQK MKQLDCIRGD ENKLLHLDNQ IKNLELQIKK 120 TTIELEILQT NLKEYELENV EGASLAQILW CEKNLKAALQ GIMDRKKRLL NETYPSLGQT 180 RLQRRGQTPF AYNFPGNQVL NRARQNLNSR SRLLMQHNPR TWPYSSRVHK SLLDQRYQPR 240 GISVGVPGAS SSFAFNPLAA SFPAIYQHPS FTQRTEIPPT YHPIQHQPFL WDPTAASIQN 300 LQLGVYGNSS MHQEIIGNPA FNCVPYQPPG TLGTSNLYQP IMPGILDQQL GVLGSSSVQQ 360 LMREDQITPG IPNQQLGALG DSFPDQSLIG VGTTPYAQFQ QAGVLGSPSV GRLANVEPLG 420 PQKNPTPTPY HNYNNSNTHK DVSSLPSTSQ LQVDPNEMNL HLLGSPSYNT SQNLVATPLL 480 NSERVSSEPV FTNNIGSITT PTHGDGDNAN NGSSGGTSNS NNGNNGIDNC DTNEKHPACL 540 TQENPPPESP TDSMFLNSLL NEAAIENDTS QPAGNQEDSF IDWDGFTLAE NLNLEDFEII 600 F*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MDNKPEMKRI EDVTRCQVTF SKRRSSLLRK ANEISVFCDV DVALVAFSPS GRVSKFCSRE  60
RIEDVLERYV KLAPDKRYQH VRCLEWKLQK MKQLDCIRGD ENKLLHLDNQ IKNLELQIKK  120
TTIELEILQT NLKEYELENV EGASLAQILW CEKNLKAALQ GIMDRKKRLL NETYPSLGQT  180
RLQRRGQTPF AYNFPGNQVL NRARQNLNSR SRLLMQHNPR TWPYSSRVHK SLLDQRYQPR  240
GISVGVPGAS SSFAFNPLAA SFPAIYQHPS FTQRTEIPPT YHPIQHQPFL WDPTAASIQN  300
LQLGVYGNSS MHQEIIGNPA FNCVPYQPPG TLGTSNLYQP IMPGILDQQL GVLGSSSVQQ  360
LMREDQITPG IPNQQLGALG DSFPDQSLIG VGTTPYAQFQ QAGVLGSPSV GRLANVEPLG  420
PQKNPTPTPY HNYNNSNTHK DVSSLPSTSQ LQVDPNEMNL HLLGSPSYNT SQNLVATPLL  480
NSERVSSEPV FTNNIGSITT PTHGDGDNAN NGSSGGTSNS NNGNNGIDNC DTNEKHPACL  540
TQENPPPESP TDSMFLNSLL NEAAIENDTS QPAGNQEDSF IDWDGFTLAE NLNLEDFEII  600
F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048033.2	0.0	PREDICTED: uncharacterized protein LOC18611623 isoform X2
TrEMBL	A0A061DIA0	0.0	A0A061DIA0_THECC; Uncharacterized protein isoform 1
STRING	EOX92190	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-26	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Thecc1EG001181t1
Entrez Gene	18611623

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]