PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 352aa MW: 39770.1 Da PI: 7.0892

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001100t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.9	2.2e-07	141	162	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Thecc1EG001100t1 141 FCEICGKGFKRDANLRMHMRAH 162 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.68E-6	136	163	No hit	No description
SMART	SM00355	0.0015	140	162	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.258	140	167	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.9E-6	142	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	142	162	IPR007087	Zinc finger, C2H2
SMART	SM00355	43	191	224	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	35	229	251	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MSNLGEPFRI SPEHPSGGRP SLRQQETFGH ADPRVPLLNL STVKTRMDSL QHFLSQSVNT 60 NTLISKDEMD LVSSEIASAI HQIIVNGAAL LSCAQKAHYP NPTPIRNRTP EPKLEVDDYD 120 EGESEIIELD AVELLSEHLH FCEICGKGFK RDANLRMHMR AHGNQYKTPE ALAKKTGNKG 180 EVKNWGRKTR FSCPYDGCNR NKKHDKFRPL KSVICVRNHF KRSHCPKMYG CNKCHKKSFS 240 VFTDLKSHLK HCGGGEESKK WKCSCGNSFS RKDKLFGHVS LFEGHMPAVM EEEDRKLKGV 300 VAMEEDEEKE EELMEREGWL EDGFFDGLLD GFGSFEDYCL QDVLAPSLNG L*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MSNLGEPFRI SPEHPSGGRP SLRQQETFGH ADPRVPLLNL STVKTRMDSL QHFLSQSVNT  60
NTLISKDEMD LVSSEIASAI HQIIVNGAAL LSCAQKAHYP NPTPIRNRTP EPKLEVDDYD  120
EGESEIIELD AVELLSEHLH FCEICGKGFK RDANLRMHMR AHGNQYKTPE ALAKKTGNKG  180
EVKNWGRKTR FSCPYDGCNR NKKHDKFRPL KSVICVRNHF KRSHCPKMYG CNKCHKKSFS  240
VFTDLKSHLK HCGGGEESKK WKCSCGNSFS RKDKLFGHVS LFEGHMPAVM EEEDRKLKGV  300
VAMEEDEEKE EELMEREGWL EDGFFDGLLD GFGSFEDYCL QDVLAPSLNG L*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969918.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A061DIK8	0.0	A0A061DIK8_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	EOX92092	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16077	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	4e-72	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001100t1
Entrez Gene	18611556

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]