PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000997t1
Common NameTCM_000997
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 225aa    MW: 25182.4 Da    PI: 10.818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000997t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-0962107454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h ++Er RR+ri + ++ Lr++lP++      K++Ka++L ++++ +++L
  Thecc1EG000997t1  62 RHRIAERHRRKRICQQYDILRSILPNL-----IKMDKASVLGETIRQVREL 107
                       599***********************9.....6************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.5658107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-661112No hitNo description
PfamPF000101.4E-662107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1262118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1062116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVRLKQLEQD TQHPLGGYYS SALCSRPNSL SQQVIPTIDI LLKSLPRKTK SKAETNIANA  60
VRHRIAERHR RKRICQQYDI LRSILPNLIK MDKASVLGET IRQVRELKKR LKETKAVCRG  120
SLEGVLPGES DNLSLGYCES DGSLLKATFS CDDRAELISD LTRAVRTVNG RVVRAEMVFV  180
GGRNKSVLWV KGLSGNEGIC MLKRALKMAV DRPKMKNGKP RFTH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047802.21e-164PREDICTED: transcription factor bHLH131
TrEMBLA0A061DHI91e-163A0A061DHI9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX919591e-164(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-28bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]