![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG000931t1 | ||||||||
Common Name | TCM_000931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 29034.1 Da PI: 9.4677 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.3 | 3.6e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye++s Thecc1EG000931t1 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 81.4 | 2.2e-27 | 103 | 187 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 a+ +q+e+a L+++++nLq+++R+l+Ge+L+ L +++Lq+Le+qLe sl+ +R kK+++l+++i+el ++ + +++en +L kk+ Thecc1EG000931t1 103 AKFWQREAAILRQQLQNLQENHRQLMGEQLHGLGVEDLQNLENQLEMSLRGVRMKKERILTDEIQELSQRGNIIHQENVELYKKV 187 589*******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-32 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.12E-44 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 5.9E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-25 | 103 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.691 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLYEFAST 60 SMKSVIERYN SLKEEHQQLL NPSLEVKVKF SPLFFCINEN WYAKFWQREA AILRQQLQNL 120 QENHRQLMGE QLHGLGVEDL QNLENQLEMS LRGVRMKKER ILTDEIQELS QRGNIIHQEN 180 VELYKKVNLM RKENMELYKK VYGTRNVNTS DGNALTSYCF DSGEGSHVPV HLQLSQPEPQ 240 NYDTPNRSKD * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 84 | 1 | 84 | MEF2C |
5f28_B | 2e-22 | 1 | 84 | 1 | 84 | MEF2C |
5f28_C | 2e-22 | 1 | 84 | 1 | 84 | MEF2C |
5f28_D | 2e-22 | 1 | 84 | 1 | 84 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021301128.1 | 1e-163 | MADS-box transcription factor 23-like | ||||
Swissprot | Q9SZJ6 | 1e-104 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A061DIY2 | 0.0 | A0A061DIY2_THECC; AGAMOUS-like 21, putative | ||||
STRING | EOX91871 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-106 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG000931t1 |
Entrez Gene | 18611413 |