PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000915t2
Common NameTCM_000915
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 274aa    MW: 31486.3 Da    PI: 4.9313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000915t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12167210654
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Thecc1EG000915t2 167 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 210
                       589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15164232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10167210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.61E-5168214No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15168227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MELSQHGFLE ELLAPRRDSW TTFSTGVTEF LPNGWNFDSF DENPTLATSN LSFVGFSHPT  60
ENPSFECPFG EHQPYPFADG FTVSEMDSSY TKNDTSPFPA QEDYPSMVDD EEFGLLSSDH  120
QHSLEERKSS CKVEMEQTSN IQSFNMGLFG EKKTKTKRLE GQPSKNLMAE RRRRKRLNDR  180
LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERINKLQEE ETKVGRDQVR LMSNLKELKP  240
NEVMVRNSPK REEKTILESI SAVQPNQDCC YLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169176ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047694.10.0PREDICTED: transcription factor bHLH93
TrEMBLA0A061DI020.0A0A061DI02_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRINGEOX918511e-180(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.24e-47beta HLH protein 93
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]