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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000878t1 | ||||||||
Common Name | TCM_000878 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26140.9 Da PI: 7.3096 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.5 | 4e-19 | 50 | 91 | 8 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rqv fskRr g++KKA EL++LC++e a+++fs+ gk + + Thecc1EG000878t1 50 ARQVAFSKRRSGLFKKARELCTLCAVETALVVFSPGGKAFSF 91 59***********************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-23 | 35 | 94 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.474 | 35 | 95 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-23 | 36 | 116 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 37 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-20 | 49 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 57 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 72 | 93 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MQGFSLLCTS EWSSQTKRGL VSLNCSFSMA GLSSKGRRRT QMWMIPGADA RQVAFSKRRS 60 GLFKKARELC TLCAVETALV VFSPGGKAFS FGHPGVDTIM NRLPNLSKPD LEAIQCTEAE 120 YEASLRELNK EYSDIMEKLR AEKLRGERLK QMRMESQGQG QSLVERPVDE LNLEELLTLK 180 SMLEEFKVKL RKRMQELSVE AGALTLISAG EIDASLGGST EGNSSGDPCD HDVGHAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969785.1 | 1e-152 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A061DH79 | 1e-173 | A0A061DH79_THECC; Mads box protein, putative | ||||
STRING | EOX91804 | 1e-173 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22822 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-35 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000878t1 |
Entrez Gene | 18611364 |
Publications ? help Back to Top | |||
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