PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 293aa MW: 31536.4 Da PI: 10.4273

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000807t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.6	4.5e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+ I + R+ ++k++w++ Thecc1EG000807t2 5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.54	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-16	2	71	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-14	4	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	2.35E-18	6	57	No hit	No description
PROSITE profile	PS51504	24.629	115	186	IPR005818	Linker histone H1/H5, domain H15
SMART	SM00526	3.0E-14	116	181	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.72E-16	116	195	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.0E-14	121	188	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	2.1E-9	123	179	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0000786	Cellular Component	nucleosome
GO:0005730	Cellular Component	nucleolus
GO:0003691	Molecular Function	double-stranded telomeric DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043047	Molecular Function	single-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA 60 IWGSRQKAKL ALKRNQLTAK HDDNPAAVIT VPPSEEVVDA KPLAISSGTP RATGPKKPIS 120 RLENILLEAI TSLKEPGGSD RASIAVYIEE KYAAPPNLKK LLATKLKLLV ANGTLIKIKH 180 KYRIAPRSTV SEARRSPLLL LEGRQKDSSK LDKKGINILT KSQVDAELSK MRSMTAEEAA 240 AAAARAVAEA EVAIAEAEEA AREAEAAEAE AEAAKIFAKA AEKALKARML DT*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00626	PBM	Transfer from PK06103.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047553.1	0.0	PREDICTED: telomere repeat-binding factor 2 isoform X2
Swissprot	Q9FJW5	2e-85	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	A0A061DIM4	0.0	A0A061DIM4_THECC; Homeodomain-like/winged-helix DNA-binding family protein isoform 1
STRING	EOX91712	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	6e-77	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000807t2
Entrez Gene	18611299

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]