PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000597t2

Common Name

TCM_000597

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 521aa MW: 58836.1 Da PI: 8.3892

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000597t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60	4.1e-19	127	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k l++s+v++ ++ lp f++ h ++ +++++++ledesg ++ vk+ +s+++ l++GW++F++ ++L egD+++F+l++ ++f + Thecc1EG000597t2 127 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTMIILEDESGHQFHVKY----YSDKTGLSAGWRQFCSVHNLLEGDVLIFQLVEPTKF--K 211 889******************666.44.5788************....555556*********************9876666..9 PP EEEE-S CS B3 94 vkvfrk 99 v ++r+ Thecc1EG000597t2 212 VYIIRA 217 999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.7E-22	119	218	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-23	120	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.08E-26	125	216	No hit	No description
PROSITE profile	PS50863	13.366	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.9E-17	127	217	IPR003340	B3 DNA binding domain
SMART	SM01019	7.6E-17	127	218	IPR003340	B3 DNA binding domain
Pfam	PF05266	3.3E-7	395	506	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MDQRVKKEAE EIHQRTMSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKKKDKA 60 LTERKEKQKS QSESRIKHEV SGPGGKHMSS KKNKGAGDGK CTPEIKSPAM IRAEEVQSNL 120 EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTMI ILEDESGHQF HVKYYSDKTG 180 LSAGWRQFCS VHNLLEGDVL IFQLVEPTKF KVYIIRANDL TELDGALGLL NLDAHTKQSD 240 AGKLLVWYLE YYACISDGLH YNRIFEKKKK EDAEIGITAC KSTKRKRPKS LPLAVVQKKN 300 KRSGLQTNLG QPAEQSENDS EEVGSEVLEG FKLSVPTIQF KDITSFENFS ILVGDLVIDS 360 ELSEDIRNKY FKLCCSQNSF LHENIIQGIN FKLIVGTISE TVNIADAIRA CKLTTSQDEF 420 DSWDKTLKAF DLLGMNVGFL RTRLRRLVNL AFESEGAADA RRYVEAKMER AQTEDEIRNL 480 EAKLAELKDT CKTFGVEIES LQSQAETYEL RFEEEVQASW *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MDQRVKKEAE EIHQRTMSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKKKDKA  60
LTERKEKQKS QSESRIKHEV SGPGGKHMSS KKNKGAGDGK CTPEIKSPAM IRAEEVQSNL  120
EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTMI ILEDESGHQF HVKYYSDKTG  180
LSAGWRQFCS VHNLLEGDVL IFQLVEPTKF KVYIIRANDL TELDGALGLL NLDAHTKQSD  240
AGKLLVWYLE YYACISDGLH YNRIFEKKKK EDAEIGITAC KSTKRKRPKS LPLAVVQKKN  300
KRSGLQTNLG QPAEQSENDS EEVGSEVLEG FKLSVPTIQF KDITSFENFS ILVGDLVIDS  360
ELSEDIRNKY FKLCCSQNSF LHENIIQGIN FKLIVGTISE TVNIADAIRA CKLTTSQDEF  420
DSWDKTLKAF DLLGMNVGFL RTRLRRLVNL AFESEGAADA RRYVEAKMER AQTEDEIRNL  480
EAKLAELKDT CKTFGVEIES LQSQAETYEL RFEEEVQASW *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	56	KKKKKKK
2	267	286	KKKEDAEIGITACKSTKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582557	7e-36	JX582557.1 Gossypium hirsutum clone NBRI_GE15408 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047227.2	0.0	PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBL	A0A061DGD2	0.0	A0A061DGD2_THECC; AP2/B3-like transcriptional factor family protein isoform 2
STRING	EOX91385	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16837	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-34	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000597t2
Entrez Gene	18611110

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]