 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thecc1EG000558t1 |
| Common Name | TCM_000558 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
| Family |
G2-like |
| Protein Properties |
Length: 375aa MW: 42036.1 Da PI: 6.1341 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG000558t1 | genome | CGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 105 | 4.3e-33 | 237 | 292 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
Thecc1EG000558t1 237 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 292
79****************************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010092 | Biological Process | specification of organ identity |
| GO:0010629 | Biological Process | negative regulation of gene expression |
| GO:0048449 | Biological Process | floral organ formation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MELSLDLGLA YVPKSISEFL KEVSNIKNGF QRLSKISDYV KRLEDEMKKI DAFKRELPLC 60
MLLLKDGIER LKEEEMQCKE MSDGSVTEEL MLPSKRNTEE NRRANMEDDG GDMKNWMSSV 120
QLWNSNFNNV DHNKKANAVQ ELKLRSEDED LSEKPIELCN NKSWGGAFVP FKGQDDKEIS 180
GLSLMTPSSE LASGNPILKS DSSCRIGSGS SLYTEQNQIK FQTKSQHQQQ QQQNSRKQRR 240
CWSPELHRRF VDALQQLGGS QVATPKQIRE LMQVDGLTND EVKSHLQKYR LHIRKLPPSS 300
AGQGNGLWSA QNQCSEHMKA NISQSGSPQG PLLATGSAKD MSSTGGDSME AEEDEKSDGH 360
SWRGGVHKQG EIDV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ837700 | 2e-60 | JQ837700.1 Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds. |
