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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thecc1EG000535t1 |
| Common Name | TCM_000535 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family |
MYB |
| Protein Properties |
Length: 268aa MW: 30280.1 Da PI: 4.8296 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG000535t1 | genome | CGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W+++Ed++l ++++++G g W+t +++ g++R++k+c++rw +yl
Thecc1EG000535t1 14 KGAWSAQEDKILTNYIELHGEGKWNTLPQKAGLNRCGKSCRLRWMNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
Thecc1EG000535t1 67 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSV 111
7899******************.*********.***********987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MGRKPCCLKE GVNKGAWSAQ EDKILTNYIE LHGEGKWNTL PQKAGLNRCG KSCRLRWMNY 60
LRPGIKRGNI SPDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS VLSKKLNGDA 120
SKPSNRQCEC EGKESVEKYR SGSTPNVIAP KARRCTGTLL SLDKGNHLPN NPCLASSTPA 180
NDELTLESQK DDVQMPNVED EALIDSELYM PNTLDYLDFS QTRIEDMFEN GNMHESELAP 240
MLEMELENLT SLLGLEDEWR ELDVEND*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX589681 | 1e-38 | JX589681.1 Gossypium hirsutum clone NBRI_GE24426 microsatellite sequence. |
| Publications
? help Back to Top |
- Chen B,Wang X,Hu Y,Wang Y,Lin Z
Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
Mol. Biotechnol., 2004. 26(3): p. 187-92
[PMID:15004287] - Paz-Ares J,Ghosal D,Saedler H
Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
EMBO J., 1990. 9(2): p. 315-21
[PMID:2303027] - Motamayor JC, et al.
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
Genome Biol., 2013. 14(6): p. r53
[PMID:23731509] - Cone KC,Burr FA,Burr B
Molecular analysis of the maize anthocyanin regulatory locus C1.
Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
[PMID:3025847] - Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
EMBO J., 1987. 6(12): p. 3553-8
[PMID:3428265] - Scheffler B, et al.
Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
Mol. Gen. Genet., 1994. 242(1): p. 40-8
[PMID:7904044] - Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
Plant J., 1994. 6(1): p. 21-30
[PMID:7920701] - Singer T,Gierl A,Peterson PA
Three new dominant C1 suppressor alleles in Zea mays.
Genet. Res., 1998. 71(2): p. 127-32
[PMID:9717435]
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