PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 535aa MW: 55863.8 Da PI: 8.9101

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000429t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Thecc1EG000429t1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.1	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Thecc1EG000429t1 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.72E-7	60	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	61	83	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.6E-5	61	83	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.9E-4	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.72E-7	132	157	No hit	No description
SMART	SM00355	150	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MNLKQHHGQR LSSCAKGMQT SSLHDKTGTL PRQLVRNPQV NDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARAQTHPQ PQNQNQAVAN PSSESDPKVQ AVDSSAPPAP APTPAPAPAS 240 APVQVSASAP APAAPTLPQS TSVISSSVLP IRSSELPENP TPIVEEAPVP APAPAGLNGS 300 CSTSTSSGSN GGSRSSVFAS LFASSTASTS LQPPQPPAFT DLIRAMGRPD RPADLAPSTS 360 TEPISLCLST NHGSSIFGTA GQERRQYAPP PQPAMSATAL LQKAAQMGAA ATNASLLRGF 420 GIVSSSSSSE QQDSLQWGQR QVEPENASVP AGLGLGLPCD GSSGLKELMM GTPVFGPKQT 480 TLDFLGLGMA AGGSPNGGLS ALITSIGGGL DVAAAAAASF GGGDFTGKDI GRSS*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MNLKQHHGQR LSSCAKGMQT SSLHDKTGTL PRQLVRNPQV NDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARAQTHPQ PQNQNQAVAN PSSESDPKVQ AVDSSAPPAP APTPAPAPAS  240
APVQVSASAP APAAPTLPQS TSVISSSVLP IRSSELPENP TPIVEEAPVP APAPAGLNGS  300
CSTSTSSGSN GGSRSSVFAS LFASSTASTS LQPPQPPAFT DLIRAMGRPD RPADLAPSTS  360
TEPISLCLST NHGSSIFGTA GQERRQYAPP PQPAMSATAL LQKAAQMGAA ATNASLLRGF  420
GIVSSSSSSE QQDSLQWGQR QVEPENASVP AGLGLGLPCD GSSGLKELMM GTPVFGPKQT  480
TLDFLGLGMA AGGSPNGGLS ALITSIGGGL DVAAAAAASF GGGDFTGKDI GRSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	133	197	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-34	133	197	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021273679.1	0.0	LOW QUALITY PROTEIN: protein indeterminate-domain 2
Swissprot	Q9LVQ7	1e-171	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A061DHE3	0.0	A0A061DHE3_THECC; C2H2-like zinc finger protein
STRING	EOX91151	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-99	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Thecc1EG000429t1
Entrez Gene	18610967

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]