PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000362t2
Common NameTCM_000362
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 383aa    MW: 42107.8 Da    PI: 7.8447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000362t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09218265455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Thecc1EG000362t2 218 SHSLAERARREKISKKMKCLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 265
                       8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-14212271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-8212267No hitNo description
Gene3DG3DSA:4.10.280.104.4E-15214272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.231214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7218265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-7220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLRGLHSLET CTYNGMDMTV LERQQARLKW QQQQNYGVQN NNPIELCASS VPQIQGFLGS  60
SFGSGQLVEM KKPEVYLGSD DFPKFVNLSV AGPEFSASKM DLVPPEAAAD YCISRTSSCQ  120
MTAFQTAVMN EEREDVILKK MESTTGRESF NKRKVEAVQD DKCKDKRIKG EVEGESEVKT  180
KCSTEVSRNS SKGNSKASEV QKPDYIHVRA RRGQATDSHS LAERARREKI SKKMKCLQDL  240
VPGCNKITGK AGMLDEIINY VQSLQRQFLS MKLAAVNPSV EFNVDNLPAK EFPAYVANFP  300
AAAKSPAMAN LACLQFNPLQ KAVSCMLDAT GHPPQTATEG IASASISIPE QALSSSCITL  360
QPFSTWNTDP QGLYNVYNMG FH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969936.10.0PREDICTED: transcription factor HBI1 isoform X2
TrEMBLA0A061DM640.0A0A061DM64_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRINGEOX910620.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-71bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]