PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 407aa MW: 46436.9 Da PI: 10.115

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000239t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53	4.4e-17	9	50	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+ien+ r +t+ kR +g+ KKA+E S+LCd++v++iif + Thecc1EG000239t1 9 KFIENEKARATTLRKRMKGLKKKAYEFSILCDVKVCMIIFEP 50 79*************************************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.6E-16	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.656	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.25E-18	2	77	No hit	No description
PRINTS	PR00404	7.1E-11	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.71E-19	3	95	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-18	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MARGKLIVKF IENEKARATT LRKRMKGLKK KAYEFSILCD VKVCMIIFEP KLKGSPAKVE 60 VWPSDPVQVK SIVDEYKIKV ASDAQKKIFS LCDFFNVRMR EVQDEVAQVR KANFKAKFQT 120 WDDRIDDFSP EQIASFLTKL DLNLEVVKKK ITMMKGDDWN HMLSAKSRIV GGFNTQSTLK 180 PSDDIPASFH PKNLSHSDNH IQAHAPVKIL NHLDRVQAFA LKNLDFGVSR EQPPVPAEPL 240 NIQLPSHSPA DEALVKLSLN LNPMENSMNP IDKSLRMSMM NHLDFRLQSG VASSSSKIPN 300 KVLYNPPPSL SVCHDPRIAM PSNVMFNSPT IPVHHDPRTA MQNNVMFKDP RAFQTRFYVP 360 SMQPEAAHSR QQLTMPLMFP QMHPFQFTDF HLDINEYEMK SKKQRL*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MARGKLIVKF IENEKARATT LRKRMKGLKK KAYEFSILCD VKVCMIIFEP KLKGSPAKVE  60
VWPSDPVQVK SIVDEYKIKV ASDAQKKIFS LCDFFNVRMR EVQDEVAQVR KANFKAKFQT  120
WDDRIDDFSP EQIASFLTKL DLNLEVVKKK ITMMKGDDWN HMLSAKSRIV GGFNTQSTLK  180
PSDDIPASFH PKNLSHSDNH IQAHAPVKIL NHLDRVQAFA LKNLDFGVSR EQPPVPAEPL  240
NIQLPSHSPA DEALVKLSLN LNPMENSMNP IDKSLRMSMM NHLDFRLQSG VASSSSKIPN  300
KVLYNPPPSL SVCHDPRIAM PSNVMFNSPT IPVHHDPRTA MQNNVMFKDP RAFQTRFYVP  360
SMQPEAAHSR QQLTMPLMFP QMHPFQFTDF HLDINEYEMK SKKQRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046740.2	0.0	PREDICTED: MADS-box transcription factor 27
TrEMBL	A0A061DFT6	0.0	A0A061DFT6_THECC; Uncharacterized protein
STRING	EOX90897	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16227	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-18	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Thecc1EG000239t1
Entrez Gene	18610801

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]