PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WOX

Protein Properties

Length: 285aa MW: 31590.7 Da PI: 5.9685

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000215t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.4e-20	30	91	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++ Thecc1EG000215t1 30 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 91 58***************8678***********************************97 PP
2	Wus_type_Homeobox	113.9	8e-37	29	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Thecc1EG000215t1 29 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 93 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.37E-11	14	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.511	26	92	IPR001356	Homeobox domain
SMART	SM00389	1.1E-5	28	96	IPR001356	Homeobox domain
CDD	cd00086	6.22E-8	31	93	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-7	31	91	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-17	31	91	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEPQQQQNQQ HPNEDSSGSG KGSFLCRQSS TRWTPTTDQI RILKDLYYNN GVRSPSAEQI 60 QRISARLRQY GKIEGKNVFY WFQNHKARER QKKRFTTTDV PMQRPTVANG GWKADDPIHN 120 NKYPNISPGY STASSSTGVL TVGQIGNYGY GSMTMEKSFR DCSISACGSS TGASESVSHN 180 FGWVGIDPAC SSPYTLFDKK KLIDGILEEE QEDDEEEEAA APHIETLPLF PMHGEDINAF 240 CSNMKPSPES CYSGWYRSDD GYAGSRASLE LSLNSYTGRS QGSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM447418	2e-84	AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046708.1	0.0	PREDICTED: protein WUSCHEL
Swissprot	Q8LL11	1e-93	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A061DFE2	0.0	A0A061DFE2_THECC; Homeodomain-like superfamily protein, putative
STRING	EOX90865	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5244	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-56	WOX family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000215t1
Entrez Gene	18610778

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]