PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000076t1
Common NameTCM_000076
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 272aa    MW: 29221.8 Da    PI: 4.4835
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000076t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036147167323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C  C k+F+++     H+r+H
  Thecc1EG000076t1 147 CYVCQKTFPTWRGVFGHLRSH 167
                       88*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.058145172IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTKPTGTAQE EFSAEEEEQQ ESSEEVDSLQ VAQGARERSA GQINETYVTQ SEKGDDGDNV  60
KIQGGGDQHP MGQSETESCD ETEGSKRDDV KGQGGDDQDQ GGAGASRFLL IGQKRGRAGD  120
PTHVASSSEL KPRKKGELEL PGCPPMCYVC QKTFPTWRGV FGHLRSHNRQ TPGAFPPPTF  180
TPVGSPEGKN GDNPLTHDLA PMMLNLARET LGKMHQDHLS RSATVSAGGA SSSMRIFGMD  240
LSESRNRTTP FLFDLNEPAP EEEDDADDGK N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976854.10.0PREDICTED: uncharacterized protein LOC18610657 isoform X1
TrEMBLA0A061DL630.0A0A061DL63_THECC; Uncharacterized protein
STRINGEOX906780.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.12e-10C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]