PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WOX

Protein Properties

Length: 255aa MW: 28885 Da PI: 5.1744

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000062t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.5e-21	98	158	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ Thecc1EG000062t1 98 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 158 89***************99************************************97 PP
2	Wus_type_Homeobox	103.5	1.4e-33	97	160	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Thecc1EG000062t1 97 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 160 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-17	93	162	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	94	159	IPR001356	Homeobox domain
SMART	SM00389	8.6E-15	96	163	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.59E-18	97	160	IPR009057	Homeodomain-like
Pfam	PF00046	3.8E-19	98	158	IPR001356	Homeobox domain
CDD	cd00086	1.43E-13	98	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MMEWENQEQQ QQHHQENQNQ RESVNVNVNN GGVMYVKVMT DEQLETLRKQ IAVYASICEQ 60 LVEMHKNLTA QQDLAGGRLG NLYCDPLMTS AGHKITARQR WTPTPVQLQI LERIFDQGTG 120 TPSKQKIKEI TSELSQHGQI SETNVYNWFQ NRRARSKRKQ LVSSSNNAES EVETEVESPN 180 EKKTKPENLL SQQNPAPRAE DLCFQNPEIT SELHFLGVLS NPNTYNGDDH LSGKMGMPGS 240 YNIYDQADDY SMAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	159	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981468.1	0.0	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	1e-115	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A061DF30	0.0	A0A061DF30_THECC; WUSCHEL related homeobox 13 isoform 1
STRING	Gorai.001G199200.1	1e-171	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-103	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Thecc1EG000062t1
Entrez Gene	18610645

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]