PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35245-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 646aa    MW: 72270.9 Da    PI: 6.7191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35245-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.63.3e-1292786453373
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lL++cAea+s++ +e+  +l+++ + ++s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l+++k++++++P++kf+++
  TRIUR3_35245-P1 278 GLLTKCAEALSEDRTEEFLKLVQEARGTVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMKILYNICPYFKFGYM 368
                      589****************************************************************9...9********************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+++ +e+++p+ef++l +   ++
  TRIUR3_35245-P1 369 AANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLTSMSKEFNIPLEFTPL-SVYATQ 461
                      ******************************************************999999**************************6.778999 PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      ++ e+L+++pgEa+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rfle+++yysa+f+s++a+lpr+s+er
  TRIUR3_35245-P1 462 VTEEMLKIRPGEAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFLETMDYYSAMFESIDANLPRDSKER 555
                      99******************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      i+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ee++g+++lgW++r+L+s+SaW
  TRIUR3_35245-P1 556 ISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLSMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWNTRKLISASAW 645
                      ************************************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.012250627IPR005202Transcription factor GRAS
PfamPF035141.2E-126278645IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MGAGATASRR GSADREDVAV TASGTVAVCS EPRVGIPVVS DLRSLQTVHK LASCVSDERK  60
YHSNYYLDTK FTITVIFSKG KLFKYRLTGA NVFCEIPTEN NLANSSWQTS PLKLEFSNSP  120
YTPLSTQLEC DNLSALSNTP DNQSSTETIS AQPISPLEAD SSYIKAGSIR ENIQVRPDPL  180
YATSRHNMQQ TLRDIENVLM APDADDATTS TKHEFEDTKP AQLMRQRSRT WSHESRQPLP  240
GVVRPHFASG GYPTASYEFR PEKRQRELRD DRQHIVKGLL TKCAEALSED RTEEFLKLVQ  300
EARGTVSING EPIQRLGAYL LEGLVARHGN SGTNIYRALK CREPESKELL SYMKILYNIC  360
PYFKFGYMAA NGAIAEALRS EDNIHIIDFQ IAQGTQWITL IQALAARPGG PPHVRITGID  420
DPVSEYARGE GLEIVGNMLT SMSKEFNIPL EFTPLSVYAT QVTEEMLKIR PGEAVAVNFT  480
LQLHHTPDES VDVNNPRDGL LRMVKGLSPK VTTLVEQESH TNTTPFLMRF LETMDYYSAM  540
FESIDANLPR DSKERISVEQ HCLAKDIVNI IACEGKDRVE RHELLGKWKS RLSMAGFKPY  600
PLSSYVNSVI KKLLACYSDK YTLEEKDGAM LLGWNTRKLI SASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-712606453378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191335.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A446KV750.0A0A446KV75_TRITD; Uncharacterized protein
TrEMBLM7YY480.0M7YY48_TRIUA; Uncharacterized protein
STRINGTRIUR3_35245-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]