PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34518-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 242aa    MW: 27290.8 Da    PI: 11.067
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34518-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-141512281894
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                      +p +f ++hg+ ++++++l++   +g+sW v+l++   ++++ r  l+ GW +F+ +ngL +gD++ F+  g+ s +e +v
  TRIUR3_34518-P1 151 VPVEFQNAHGYAERSKVELRM---RGKSWFVNLKHsprERGRPRASLRYGWHQFCVDNGLGVGDTCFFRALGEgSAGEVHV 228
                      699999999999888766664...67*******997655555559************************888889996655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.54183147IPR003340B3 DNA binding domain
SMARTSM010191.7E-986237IPR003340B3 DNA binding domain
CDDcd100171.87E-1386230No hitNo description
Gene3DG3DSA:2.40.330.102.0E-686148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-786148IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-20149236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-13151221IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.321151232IPR003340B3 DNA binding domain
PfamPF023622.2E-11151228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRYTFGQYAS VASHAPLRVR GEAIQQPKNG TRPKQQSTLA RRQPLSSGGD PGRHRRLPSI  60
TPAGGPPAAS TRQERREMDG VEGFQFFQII LENSSSRLRL PDKFTRVLLE GGKPQEVKLR  120
DAGHGRRFWD VKVVLDADGH MYLGRGWGQN VPVEFQNAHG YAERSKVELR MRGKSWFVNL  180
KHSPRERGRP RASLRYGWHQ FCVDNGLGVG DTCFFRALGE GSAGEVHVLK VEVRRRDGSY  240
VD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3769981e-102AK376998.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148430.15e-57B3 domain-containing protein Os03g0212300-like
TrEMBLT1NUJ51e-177T1NUJ5_TRIUA; Uncharacterized protein
STRINGTRIUR3_34518-P11e-178(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264