PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34439-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 958aa    MW: 106638 Da    PI: 7.6066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34439-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.8e-103364141698
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      l +p k a + +++  +++ + led++g+s  v+l  +  +g+  + +GW++Fv+++ +k  ++++F+++g s+f   v+vf 
  TRIUR3_34439-P1 336 LLIPPKPAGASKMVGLTNQLVCLEDSEGKSSMVRL--SVVDGSLAFYQGWSNFVSDHSIKWAEIILFEYTGCSKF--SVRVFG 414
                      56666665555444455678***************..8888999999**********************986777..888875 PP
2B334.73.1e-118959503591
                      EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
               B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                       ++l+d+  r W v +    +s  + +t+GWk+Fv an+L++gD +v+ +d + +e  
  TRIUR3_34439-P1 895 IVMLKDPMKRLWPVFY--HETSLFVGFTGGWKSFVAANKLEAGDLCVLLMDLDeDELV 950
                      599*************..9*****************************9875534444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.841321416IPR003340B3 DNA binding domain
SMARTSM010190.0096324416IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-13324416IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-12327416IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-8332413No hitNo description
PfamPF023623.7E-8335413IPR003340B3 DNA binding domain
SMARTSM010190.01855954IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-11876954IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-10889957No hitNo description
SuperFamilySSF1019369.22E-12892953IPR015300DNA-binding pseudobarrel domain
PfamPF023629.2E-9894949IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461896958IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MPQSLTGEAS TYFSRPGRAA LLFRGEGVWR RERMSSGELA HQNRPRSRDT EMECEEEEED  60
ETCKMLSEEE EEEVEMWDKK VQNRKAFTGS LEKGRRMEEP IELSDDADDN ETIMEMSKKA  120
GKHKEKKRRH NDDGDHKKKK KSVSSHGGDK NTHSANRDKD KRRDMLLSPN KNKDPFHSKE  180
KSRTMPSSHG GDGKMHPGDH HNDNKSSTMW RSEYDKYKGI PKKEMKKDKK PWPVHNGGSR  240
EEEKKKTVLV LSKEGKMPVL DNSSNKGNKW KKTPMLYDKV KKPRTSDKDD KAGSYDRKKT  300
TPGYNAGHKV QSGHGEKKKV KFAFFKVAGE HFEEFLLIPP KPAGASKMVG LTNQLVCLED  360
SEGKSSMVRL SVVDGSLAFY QGWSNFVSDH SIKWAEIILF EYTGCSKFSV RVFGADSWER  420
VSFTVETRGE EKKQKESYAP DDLAPCRCSR DIDGHHYVSG EYTRSNRPKT KSDGYTDNAE  480
VSPGNLVAKS ANAVPGTRRM SANSIEDPNG VVGGIVGGSS MAPDNKDGHL ANGKHTGNAI  540
FPSYIKATTR SPETVVIADE APLAQENKDT VALDNKEANL TIGECKTKCN ASITCNNEKA  600
TRLDLVPVTI DAAPLSQENG DAVELMTFAG HIEDAVMMKE STSAKCAEIH GSDEDLRRKQ  660
EGNTVRLECT AAADKFPSNN KMDTNGNACS KYEYPGGSQC LGKWKEATVS GRESLDGTEL  720
IRPEKRLKTE EKLVGAMGVN PVERGYDGTH SCVPSQISES GLTRTKIEHS VNGKGATGKP  780
ETKIEQVGPV ESIGCRQERN NISMSANRAV AHQTEHHFFR QEDAKSSNPA PPVPLLPVKV  840
EVSELDDHRP VLKASLQFVV PSTTQTRLLC VEVYQELPDP LSNAVGRKGR LDRNIVMLKD  900
PMKRLWPVFY HETSLFVGFT GGWKSFVAAN KLEAGDLCVL LMDLDEDELV YDVEITRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126140KRRHNDDGDHKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196102.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_020196103.10.0B3 domain-containing protein Os02g0598200-like
TrEMBLT1NUB80.0T1NUB8_TRIUA; Uncharacterized protein
STRINGTRIUR3_34439-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-07B3 family protein