PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34424-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 316aa    MW: 34472.8 Da    PI: 10.2334
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34424-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.45.7e-4090166177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cqve+C+adls ak+yhrrhkvCe h+ka+ v ++g++qrfCqqCsrfh ++efD++krsCr+rLa+hn+rrrk+ 
  TRIUR3_34424-P1  90 RCQVEDCKADLSGAKHYHRRHKVCEYHAKAALVSAAGKQQRFCQQCSRFHVITEFDQTKRSCRKRLAEHNRRRRKPV 166
                      6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3383152IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.85588165IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-3789167IPR004333Transcription factor, SBP-box
PfamPF031108.3E-3191164IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
PMAPLPMPGM QLQMPPMPHG MHSHGDVYSA MGMVKREGGA GDAGRIGLNL GRRTYFSPGD  60
MMAVDRMLMR SRLGGVFGLG FGRAHHQAPR CQVEDCKADL SGAKHYHRRH KVCEYHAKAA  120
LVSAAGKQQR FCQQCSRFHV ITEFDQTKRS CRKRLAEHNR RRRKPVASGA GAVSKDLAVP  180
SRKQNAGGIS SSYAGDNNTL SATYTSATSC LQQGQARLAG GGAMTLTLGV PPEKDRRQQQ  240
LSNSMQLHHH QEQQHFITSQ NNIRDSNTLS FASVSSSTVP LAVAANGEVS DQNNDNNNNV  300
SNNVNSGMHM FEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28911641184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147164KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764430.0AK376443.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146777.11e-159squamosa promoter-binding-like protein 10
SwissprotA2YFT92e-79SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE82e-79SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLT1NUA40.0T1NUA4_TRIUA; Uncharacterized protein
STRINGTRIUR3_34424-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-46squamosa promoter binding protein-like 8