PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_34195-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 332aa MW: 34852.3 Da PI: 6.5905

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_34195-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.2	3.8e-10	102	127	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ TRIUR3_34195-P1 102 FKTKLCCKFRA-GTCPYVTNCNFAHGM 127 69*******.***********95 PP
2	zf-CCCH	18.3	4.1e-06	175	200	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ TRIUR3_34195-P1 175 YKGRHCKKFYTEEGCPYGDACTFLHD 200 78888********************7 PP
3	zf-CCCH	43.5	5.1e-14	243	268	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg TRIUR3_34195-P1 243 WKTRICNKWEMTGYCPFGSKCHFAHG 268 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.4E-8	99	132	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-14	99	134	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.028	101	128	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	101	127	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-7	102	127	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-7	173	202	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-9	173	202	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.629	174	202	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.3	174	201	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-9	239	269	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-15	239	269	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.1E-9	242	269	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	242	270	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-11	243	268	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGDQGLSG GGYGGDRNSS 60 QPHSRAGSEQ PPSGKKPQGS GPSGGGDAGS TSKSRAIGKM FFKTKLCCKF RAGTCPYVTN 120 CNFAHGMEEL RKPPPNWQEI VAAHEEATEQ REEHQIPIMT SSNVVPGDSV SGRAYKGRHC 180 KKFYTEEGCP YGDACTFLHD EQSKARESVA ISLSPSVGGG SYNSAAAAAA SPNGPTILKP 240 SNWKTRICNK WEMTGYCPFG SKCHFAHGAA GGGELEVSST KGEMEKINAS SRNSIITSAP 300 RGSASTESVA AYTESAVASA ERVSAAADRE LQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373307	0.0	AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198349.1	0.0	zinc finger CCCH domain-containing protein 56
Swissprot	Q84UQ3	1e-130	C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBL	M7Z929	0.0	M7Z929_TRIUA; Zinc finger CCCH domain-containing protein 56
STRING	TRIUR3_34195-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6615	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-83	C3H family protein