PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33804-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 304aa MW: 32815.8 Da PI: 4.3652

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33804-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.6e-11	144	195	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +k+ +r ++NR +A +sR+RKk +++ Le+++k Leae ++L l+ e TRIUR3_33804-P1 144 SKKKMRQMRNRDSAMKSRERKKSYVKDLETRSKYLEAECRRLSYALQCCAAE 195 699************************************9998777665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-4	141	205	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.3E-12	141	203	No hit	No description
PROSITE profile	PS50217	9.266	143	185	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.38E-10	145	203	No hit	No description
Pfam	PF00170	6.6E-9	145	201	IPR004827	Basic-leucine zipper domain
CDD	cd14704	3.02E-13	146	197	No hit	No description
PROSITE pattern	PS00036	0	149	163	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDTDLDLDAL LASFAGESAA VSELLAPPPL DAAEAGSPES VTSRSSPAGE EVLSEIERFL 60 MQEEEAAGAG AEPVDGISVD EFLDALFDGA EEGGEKGNGS EAEAGGSTDG DSRRGEEGVE 120 VVTPETEVEV VTPETEVDGD DPISKKKMRQ MRNRDSAMKS RERKKSYVKD LETRSKYLEA 180 ECRRLSYALQ CCAAENMALR QNMLKDRPIG AHTAMQESAV LSETLPLVSL LWLVSIVCLF 240 LTPGLPNRSL AAPRRAERGL TMVAGKPSSD QPETLELLLH GRRWRGTRER IKLDTPPLRA 300 AAAC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365505	0.0	AK365505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034K24.
GenBank	AK369957	0.0	AK369957.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101P04.
GenBank	AK370149	0.0	AK370149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2105L10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184631.1	0.0	bZIP transcription factor 50
Swissprot	Q69XV0	1e-102	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	M7YC23	0.0	M7YC23_TRIUA; BZIP transcription factor 60
STRING	TRIUR3_33804-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	4e-14	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]