PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33712-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 379aa MW: 42444.5 Da PI: 5.1437 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106 | 2.9e-33 | 37 | 128 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+++++++sw++ gnsfv++d + f++++L+++Fkh+nf+SF+RQLn+YgF+kv+ ++ we++++ F +g+k+ll+ TRIUR3_33712-P1 37 FLTKVYDMVSDAATDKVMSWTDAGNSFVIWDAHAFERDLLSRHFKHRNFSSFIRQLNTYGFRKVDPDR---------WEWANEGFLRGQKHLLK 121 9****************************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 ikrkk+ TRIUR3_33712-P1 122 IIKRKKR 128 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.1E-36 | 30 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-52 | 33 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.18E-32 | 34 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-29 | 37 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-16 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-16 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 76 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-16 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MGSSKGSPPP SAAGPSSAGN APAPVGPAPR PPEVAPFLTK VYDMVSDAAT DKVMSWTDAG 60 NSFVIWDAHA FERDLLSRHF KHRNFSSFIR QLNTYGFRKV DPDRWEWANE GFLRGQKHLL 120 KIIKRKKRPQ EAGRELEKAP VKAAPGTENI EIGRYGGLVK EVETLKRDKS LLMQQLVDLR 180 HYQQSSNLEV QSLIQRLQVM EQNQKQMMAL LSIVVQNPSL LNQLVQQQQQ QRRANWYEDG 240 NKKRRFPALE QGPVTDYGTS GAGTEIIQYR PPAPETSSQV IPDEAFLSAT TQPISSPALN 300 MPMDIDTQTT SDNLNTQGSS GDIFADMPAL PDFDDMHLWF GEDGEPTLTI QDYDESPQSE 360 QDCQMEAQHN YNDPQHGIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-25 | 19 | 126 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-25 | 19 | 126 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-25 | 19 | 126 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362997 | 0.0 | AK362997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2012C04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148069.1 | 0.0 | heat stress transcription factor A-9-like | ||||
Refseq | XP_020148070.1 | 0.0 | heat stress transcription factor A-9-like | ||||
Swissprot | Q10PR4 | 1e-165 | HSFA9_ORYSJ; Heat stress transcription factor A-9 | ||||
TrEMBL | M8AVW6 | 0.0 | M8AVW6_TRIUA; Heat stress transcription factor A-9 | ||||
STRING | TRIUR3_33712-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11494 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-61 | heat shock factor 3 |
Publications ? help Back to Top | |||
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