PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33674-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 740aa MW: 81917.2 Da PI: 5.9702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33674-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	6.7e-14	194	272	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r ks+++++ g +++ +C + gk++ k+ r++C+a +++ +++d+ w+vt+ ++ HnH+++ TRIUR3_33674-P1 194 DFYNLYSWEMGFGIRYGKSRRNTKGG-KCMQEITCVNAGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHAFS 272 6*******************8777.66789******98877..........9***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-9	194	272	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MEFSVEEEPR SGAPLTLGLG EDAMEAVRRA FPGQDFAIDV VNRAFGRRNP AERSQQDSSA 60 CGISGACTSE KPMDLEQVEN AGKSCAQQDP SASEMQLRSQ EVEQAGQRCD APPAPADVGT 120 EAGGPPAPAD VGAEAGGGWN RRVRRGRIPD EREPDAQRVS ALEKALTGFA ERQTDVVVNP 180 TVGTCFDSIT EAYDFYNLYS WEMGFGIRYG KSRRNTKGGK CMQEITCVNA GKPNMGGKSR 240 RCECTALIRL LRTDDNGWYV TQHRKVHNHA FSTTYGNKVH WPSHKHLDKY TRDLVRQLRH 300 NNVNLGVYDT IASFFGRMEN VPFNKRSIRT LCGEVIREQA VDDARKTMET AAASGERPEN 360 HTGEETTFNC MGLASTTVGS PNMPVEPLRY PEQDDTHSNA EAGRLADLLL AFGDCHLVLK 420 SCTYDDLINS NGTMSGLEEA VKAVTPHLQQ GIFGDLWSRA HNSGGVVSAQ VLTIKDLFRF 480 TRWLTTTTGQ HNLRCVQQRA KLVNSGKAVL EPEQIALLHL YQAENDEYSV KMNKLQGERD 540 AKIAHYMAKI DEARKSFEVS IQAAKQHYPV SASYVALDSN ELRAQCWTMY LAQCRKEAKD 600 LNAKASNIVE KYGPEVIQRH LFEFCSQETN RQALLKYAQT KVNNLKEAGD ARGEDTLHDY 660 MTLLDIEKAY ALLAAEEQIA NCPDTCGGSE DADRGNRNNI IARGEAADGA RGDGQDGGEG 720 ASEGPPRQKR QRNDQDYVWW

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MEFSVEEEPR SGAPLTLGLG EDAMEAVRRA FPGQDFAIDV VNRAFGRRNP AERSQQDSSA  60
CGISGACTSE KPMDLEQVEN AGKSCAQQDP SASEMQLRSQ EVEQAGQRCD APPAPADVGT  120
EAGGPPAPAD VGAEAGGGWN RRVRRGRIPD EREPDAQRVS ALEKALTGFA ERQTDVVVNP  180
TVGTCFDSIT EAYDFYNLYS WEMGFGIRYG KSRRNTKGGK CMQEITCVNA GKPNMGGKSR  240
RCECTALIRL LRTDDNGWYV TQHRKVHNHA FSTTYGNKVH WPSHKHLDKY TRDLVRQLRH  300
NNVNLGVYDT IASFFGRMEN VPFNKRSIRT LCGEVIREQA VDDARKTMET AAASGERPEN  360
HTGEETTFNC MGLASTTVGS PNMPVEPLRY PEQDDTHSNA EAGRLADLLL AFGDCHLVLK  420
SCTYDDLINS NGTMSGLEEA VKAVTPHLQQ GIFGDLWSRA HNSGGVVSAQ VLTIKDLFRF  480
TRWLTTTTGQ HNLRCVQQRA KLVNSGKAVL EPEQIALLHL YQAENDEYSV KMNKLQGERD  540
AKIAHYMAKI DEARKSFEVS IQAAKQHYPV SASYVALDSN ELRAQCWTMY LAQCRKEAKD  600
LNAKASNIVE KYGPEVIQRH LFEFCSQETN RQALLKYAQT KVNNLKEAGD ARGEDTLHDY  660
MTLLDIEKAY ALLAAEEQIA NCPDTCGGSE DADRGNRNNI IARGEAADGA RGDGQDGGEG  720
ASEGPPRQKR QRNDQDYVWW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358874	0.0	AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188421.1	0.0	uncharacterized protein LOC109774115
TrEMBL	M7ZJ49	0.0	M7ZJ49_TRIUA; Uncharacterized protein
STRING	TRIUR3_33674-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-10	FAR1-related sequence 7