PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33328-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 850aa MW: 91801.1 Da PI: 7.3018

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33328-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.1	1e-27	152	232	5	87
trihelix 5 qevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++r++k+Ckek+en++k+yk++k+++ +r ++ +t+++f+qlea TRIUR3_33328-P1 152 EETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRNAKKCKEKFENVHKYYKRTKDSRAGR--NDGKTYRFFRQLEA 232 79*************************************************************97..56668*****85 PP
2	trihelix	108.8	3.4e-34	551	636	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea TRIUR3_33328-P1 551 RWPKAEVHALIQLRSNLDMRYQEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 636 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.7	145	207	IPR001005	SANT/Myb domain
CDD	cd12203	1.09E-24	152	212	No hit	No description
Pfam	PF13837	7.1E-19	152	233	No hit	No description
PROSITE profile	PS50090	5.413	152	205	IPR017877	Myb-like domain
SMART	SM00717	0.0017	384	610	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.41	544	608	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.4E-4	550	607	IPR009057	Homeodomain-like
Pfam	PF13837	1.5E-23	550	637	No hit	No description
CDD	cd12203	1.37E-29	551	615	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MAAMLARGQR LCQMVHDAGL RHGTEDRLQT VLATGWWMVA VDASYDTQYD QMIVSSTNKF 60 TVAKKLADDI AVLLQPTRPG SSLPATLIGL HGRNLFQASV ALRLPADATK NVCLEVALAV 120 SLGIVIELNA IENKWIFKKK TEADGGIVCH LEETLALLKI RSDMDAAFRD ATLKGPLWEE 180 VSRKLAEEGY RRNAKKCKEK FENVHKYYKR TKDSRAGRND GKTYRFFRQL EAMQSTSGVT 240 AAPMASAPPP ATAVGVPGVV GPTALRPLAE PPPVGAAAAA TAGLPTPVVV GNLSFSTSNT 300 EEYSDEDDSD DEGTDDMGGG ADERGKRKRT SEGGAAAGSG GEAGSGKMMR FFEGLMKQVM 360 ERQEAMQQRF LEAIEKREQD RMIREEAWRR QEMARLAREQ EILGQERAMA ATRDAAVLSF 420 IQKITGQTIP MPSIAAQAIT FMPPPPPSQP HATPIAYSAA PVHPRPPSSQ PPATHSPPQP 480 QPSPRQQKPP TMPPVTPQPH KSPAPATPQL QQQAPAVNSS CMDIVVVPSE APHDSSGYDG 540 SGGGSGPTSS RWPKAEVHAL IQLRSNLDMR YQEAGPKGPL WEEISAGMRR MGYNRSSKRC 600 KEKWENINKY FKKVKESNKK RPEDSKTCPY FHQLEALYRN KAALGSPSGA GGALALPPPA 660 VHANAAPQER IEAFTVAAPI SQTAPQQPPV AKNAPATPGT ARVMAAARGQ ESPGERKGWR 720 RATAAAEGIM KETTMEQRQP QPQAAQQAAI NSYNRTGGGG AESDNMDEDD EDEDDYEDED 780 EEDDLDGNKT QYKIQFQGQQ QHQNQHQQHH HNVVRPNATS SGGGNPPGAA APSAPAAATT 840 TAGSFLGMVQ

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MAAMLARGQR LCQMVHDAGL RHGTEDRLQT VLATGWWMVA VDASYDTQYD QMIVSSTNKF  60
TVAKKLADDI AVLLQPTRPG SSLPATLIGL HGRNLFQASV ALRLPADATK NVCLEVALAV  120
SLGIVIELNA IENKWIFKKK TEADGGIVCH LEETLALLKI RSDMDAAFRD ATLKGPLWEE  180
VSRKLAEEGY RRNAKKCKEK FENVHKYYKR TKDSRAGRND GKTYRFFRQL EAMQSTSGVT  240
AAPMASAPPP ATAVGVPGVV GPTALRPLAE PPPVGAAAAA TAGLPTPVVV GNLSFSTSNT  300
EEYSDEDDSD DEGTDDMGGG ADERGKRKRT SEGGAAAGSG GEAGSGKMMR FFEGLMKQVM  360
ERQEAMQQRF LEAIEKREQD RMIREEAWRR QEMARLAREQ EILGQERAMA ATRDAAVLSF  420
IQKITGQTIP MPSIAAQAIT FMPPPPPSQP HATPIAYSAA PVHPRPPSSQ PPATHSPPQP  480
QPSPRQQKPP TMPPVTPQPH KSPAPATPQL QQQAPAVNSS CMDIVVVPSE APHDSSGYDG  540
SGGGSGPTSS RWPKAEVHAL IQLRSNLDMR YQEAGPKGPL WEEISAGMRR MGYNRSSKRC  600
KEKWENINKY FKKVKESNKK RPEDSKTCPY FHQLEALYRN KAALGSPSGA GGALALPPPA  660
VHANAAPQER IEAFTVAAPI SQTAPQQPPV AKNAPATPGT ARVMAAARGQ ESPGERKGWR  720
RATAAAEGIM KETTMEQRQP QPQAAQQAAI NSYNRTGGGG AESDNMDEDD EDEDDYEDED  780
EEDDLDGNKT QYKIQFQGQQ QHQNQHQQHH HNVVRPNATS SGGGNPPGAA APSAPAAATT  840
TAGSFLGMVQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354426	0.0	AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBank	AK361507	0.0	AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBank	AK372713	0.0	AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191229.1	0.0	trihelix transcription factor GTL1-like isoform X1
TrEMBL	M8A4E9	0.0	M8A4E9_TRIUA; Trihelix transcription factor GT-2
STRING	TRIUR3_33328-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	5e-49	Trihelix family protein