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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33088-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 25764.5 Da PI: 4.2974 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.9e-06 | 197 | 216 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ TRIUR3_33088-P1 197 FVCHVCSKTFNRYNNMQMHM 216 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.12E-5 | 195 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.8E-5 | 197 | 216 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.242 | 197 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MESASLGVRY FEWLRPRSPR ASSPSSVPAS LSSPSSDCLV PGQDHPSTMM CLPLLGRVGA 60 GEETTSGGTP VGAQTSPVKE ELSGITEDAG VDLNIGLPAG GGYSSEEEVP PMAMSMDEDE 120 EEEEEEEVET DEEEEEKPRY ERCKVEAGVH VEHSEMLVES VEGSDLGSVG GEESSCCRHR 180 RFWIPTPAQI LIGAVQFVCH VCSKTFNRYN NMQMHMWGHG REYRKGPESL KGAAGQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361054 | 0.0 | AK361054.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131F08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176127.1 | 1e-120 | protein TRANSPARENT TESTA 1-like | ||||
TrEMBL | M7Z0V7 | 1e-171 | M7Z0V7_TRIUA; Protein TRANSPARENT TESTA 1 | ||||
STRING | TRIUR3_33088-P1 | 1e-172 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-27 | WIP domain protein 3 |