PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32694-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 484aa    MW: 53154.5 Da    PI: 7.4839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32694-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-056688123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C+k F r  nL+ H r H
  TRIUR3_32694-P1 66 YICEVCHKGFQRDQNLQLHRRGH 88
                     89*******************88 PP
2zf-C2H210.90.0014142164123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC  C+k +  +s+ k H + +
  TRIUR3_32694-P1 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.75E-76588No hitNo description
Gene3DG3DSA:3.30.160.602.4E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035568107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.75E-7137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
SHTSEEESLS SFQQQPKLEV GAAGPSRGDP AAMPVVKKRR GHPGNPDPDV EVVALSPKTL  60
VATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST DAKKKVYICP EVTCPHHDAT  120
RALGDLTGIK KHFSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DVLAEDNSRV NHSLATMVGS LHGQHDMYSH GVPSPTDMVA NMSSNDHNSD  240
MHLRSLSPYA LITRNTALFS NQIPPKDPGF PLDGSASGYP YMSMNSPYMS ATALLQKAAE  300
MGAKTSQDPI SPLLLKGFAN NFTSARDHMG ISSGSQGDSM GNSAANSVCM KAAEDESMNG  360
HNNILINSAW TSGGMMTPTT VPLIGLMNNP FSMRQEKESP QIMPDIQTQH NRQENISGVG  420
DAGLTQDFLG LGGNGNLDIS SGTYNTDVTA LSYSDEQQKN QEHMYSYHES SLDSTALDKP  480
MWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32138201366Zinc finger protein JACKDAW
5b3h_F1e-32138201366Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163244.10.0protein indeterminate-domain 9-like
TrEMBLT1NPK10.0T1NPK1_TRIUA; Uncharacterized protein
STRINGTRIUR3_32694-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2