PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32580-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 341aa    MW: 38298.2 Da    PI: 6.1065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32580-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14226314195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f  +l++s+v k  +l++p +f  +h  ++++s tl+    +grsW +++  ++  ++  l + W +F+ +n+L+++D +vF+l+  +++e v+
  TRIUR3_32580-P1 226 FTVILSRSHVQKPFQLYIPGRFH-KHLPEERTSATLI---CRGRSWAMRY--CGDLKTKRLDADWMDFAVDNRLQVNDACVFELVTGTREEVVF 313
                      778999****************9.5533334444444...489*******..77777777***********************99544444444 PP

                      E CS
               B3  95 k 95 
                      +
  TRIUR3_32580-P1 314 Q 314
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-20221319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-17222317IPR015300DNA-binding pseudobarrel domain
CDDcd100174.69E-20224319No hitNo description
PfamPF023622.8E-12226316IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773226321IPR003340B3 DNA binding domain
SMARTSM010194.1E-7226321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAANGFGCHE WEAYLLHEAN YSAPPDMRVL GLRRLTAGCV LVPLQPNNDR FHGEIARIRA  60
SLPEEVRGHP EYTANNHTQW AAYFQCRHEE QLASTNNGPV RGVHNTDSHR PWWGVPGCTL  120
HFVLEHLEGG NEPPFEYPAT PAPDGDQCKR IVQSRCMESS DVQGTSPLPD RVKDEQMETP  180
LCPSKQLPDA HPIKPKVEPC ENSLSPAPDA SEDCETTPLS CNHPFFTVIL SRSHVQKPFQ  240
LYIPGRFHKH LPEERTSATL ICRGRSWAMR YCGDLKTKRL DADWMDFAVD NRLQVNDACV  300
FELVTGTREE VVFQVQILRG GLPKDITSKG YTADEPLVIV G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175391.11e-128B3 domain-containing protein Os06g0112300-like
TrEMBLT1NP920.0T1NP92_TRIUA; Uncharacterized protein
STRINGTRIUR3_32580-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-07B3 family protein