PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32369-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 393aa    MW: 42715.6 Da    PI: 7.7001
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32369-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2316.3e-10116172155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++++r++A+++d  +   g krk  + g +  ++ Aa+a++ a++k++g
  TRIUR3_32369-P1 116 SCYRGVTRHRWTKRYEAHLWDnTCRrEGqKRKGRQGG-YEKEDRAARAYDLAALKYWG 172
                      79*******************5555444666888866.5555*************987 PP
2AP2513.6e-16215266155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a++k++g
  TRIUR3_32369-P1 215 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRG 266
                      78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-13116181IPR016177DNA-binding domain
PfamPF008474.5E-7116172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-11117181IPR001471AP2/ERF domain
PROSITE profilePS5103216.226117180IPR001471AP2/ERF domain
SMARTSM003801.1E-14117186IPR001471AP2/ERF domain
CDDcd000184.32E-15118180No hitNo description
PRINTSPR003672.2E-7118129IPR001471AP2/ERF domain
PfamPF008471.0E-10215266IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-18215275IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-19216274IPR001471AP2/ERF domain
SMARTSM003808.3E-32216280IPR001471AP2/ERF domain
PROSITE profilePS5103219.348216274IPR001471AP2/ERF domain
PRINTSPR003672.2E-7256276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSPPTNGSAS LPVTDLSDAV LFPFDGFSAD DFFATAPPPL PPPLGADPGR LLLASSRNDV  60
HASTDLAVAA PVETTGSSSA LAAALPLTPS SGQTHSEHRG RGTPLPLTPS SGQRTSCYRG  120
VTRHRWTKRY EAHLWDNTCR REGQKRKGRQ GGYEKEDRAA RAYDLAALKY WGVNATTNFP  180
KENYIRELEE MQNMSRHELV ASLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK  240
DLYLGTFATE EEAAEAYDIA ALKFRGDNAV TNFEPSRYNL EAIACSDLPV NGRRMSSHKP  300
TAAAAPEAQG EITFVSSAPP IPQQSCSDVQ VPPYVLHGLL QLQASEPLHA LPLSSYSFGE  360
PSFYWPFGDV EQKVQLDSKV EVAGGILQLA NSA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161337.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6PQQ31e-104AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLT1NNP10.0T1NNP1_TRIUA; Uncharacterized protein
STRINGTRIUR3_32369-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-68AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]