PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31628-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 351aa    MW: 38263.1 Da    PI: 8.3334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31628-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09136183455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  TRIUR3_31628-P1 136 SHSLAERVRRERISERMRLLQTLVPGC----DKVTGKALVLDEIINYVQSLQ 183
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.82E-10130187No hitNo description
SuperFamilySSF474591.83E-16130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.358132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15132196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MADFSSTHHH SLLKMPAVFT TNDASTPNIS SFLLYNQTSH GQPPAPANAC AAMVEDASRE  60
SSSAVLDNAS LQASASVDRK RKATDDSTTL SSAHSKDCKD GKSRRKREKS STEQDQEEAP  120
KGYIHVRARR GQATDSHSLA ERVRRERISE RMRLLQTLVP GCDKVTGKAL VLDEIINYVQ  180
SLQNQVEFLS MRIASMSPVL YGFGLDSDGL HDQAQKIGGM FQQEALAVPA PAASQAMMDT  240
ASYSLQGQGG ISFSQSQSQV GMHALQFLSL ARPYVQAKPQ ISNAWRPFYP NFPCIIFSGQ  300
WQLPDAISGR AKTGTAQSIG VQQHVLLPVG EEKEMKQPIL TIGAGIMLQD R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508100.0AK250810.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188652.11e-178transcription factor bHLH137-like
SwissprotQ93W885e-52BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A446XDY20.0A0A446XDY2_TRITD; Uncharacterized protein
TrEMBLT1NLN40.0T1NLN4_TRIUA; Uncharacterized protein
STRINGTRIUR3_31628-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]