PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31604-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 363aa    MW: 38761.4 Da    PI: 6.2636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31604-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1787.1e-55652982220
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevsPil 91 
                      ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a f+ AL ar +r   ++ + +a+++  +s   ++++++a++l  f++++P++
  TRIUR3_31604-P1  65 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLTPWH 158
                      79***************************************************943444555555444444444777777777789******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181
                      +f++++aN+aIleaveg + vH++D++ ++++Q p+L++ LasR+egpp lR+T+ +   sg       ++ e+g +L +fA++ +v+++f+++
  TRIUR3_31604-P1 159 RFGYMAANHAILEAVEGFSVVHVVDLSTTHCMQMPTLIDMLASRAEGPPILRLTVADVGCSGpppaLDMSYDELGAKLVNFARSRNVTMDFRMV 252
                      ******************************************************888766667666788899********************** PP

             GRAS 182 .......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                             +++ +++l++++L  +  Eal+Vn+++ lh+++de++ +
  TRIUR3_31604-P1 253 ptspadaLTSLVDQLRVQQLVSDGTEALIVNCHMLLHTVPDETAGS 298
                      877666555566677777777777****************998765 PP
2GRAS40.73.6e-13301360313373
             GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++W +r++ aGF++v+++e+aa +++++l++++  g+ ++ e++ l+l+Wk++++v++SaW
  TRIUR3_31604-P1 301 ARWGQRMRGAGFRAVAFGEEAAGEIRTMLNEHA-AGWGMKREDDDLMLTWKGHNVVFASAW 360
                      68*******************************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.33538363IPR005202Transcription factor GRAS
PfamPF035142.5E-5265298IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.47.109.7E-4161234IPR016039Thiolase-like
Gene3DG3DSA:3.40.47.109.7E-4274287IPR016039Thiolase-like
PfamPF035141.3E-10301360IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MQFTHAAVTA PPLYPNGHHG LGLGLFLDVG APRARPWPAA GSLFPTLPPS SKISLGNLNS  60
AGCMEQLLVH CANAIEANDA TLTQQILWVL NNIAPADGDS NQRLTAAFLC ALVARASRTG  120
ACKAVTAAVA AAVESAALHV HRFTAVELAS FVDLTPWHRF GYMAANHAIL EAVEGFSVVH  180
VVDLSTTHCM QMPTLIDMLA SRAEGPPILR LTVADVGCSG PPPALDMSYD ELGAKLVNFA  240
RSRNVTMDFR MVPTSPADAL TSLVDQLRVQ QLVSDGTEAL IVNCHMLLHT VPDETAGSDR  300
ARWGQRMRGA GFRAVAFGEE AAGEIRTMLN EHAAGWGMKR EDDDLMLTWK GHNVVFASAW  360
APS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-293829166308Protein SHORT-ROOT
5b3h_B5e-303829112254Protein SHORT-ROOT
5b3h_E5e-303829112254Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627400.0AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.10.0scarecrow-like protein 32
SwissprotQ9SN223e-89SCL32_ARATH; Scarecrow-like protein 32
TrEMBLM8AQZ00.0M8AQZ0_TRIUA; Uncharacterized protein
STRINGTRIUR3_31604-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.17e-89GRAS family protein