PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31165-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 365aa    MW: 40286.4 Da    PI: 7.9811
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31165-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.6e-32401402103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++iswse+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+Y    v  +  + k  ++ weF+++ F++g+k+ll+
  TRIUR3_31165-P1  40 FLNKTYQLVDDPAVDDVISWSEDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYVLMGVLVQGFR-KIVPDRWEFANDCFRRGEKRLLC 132
                      9**********************************************************99999998876.456999***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  TRIUR3_31165-P1 133 DIHRRKSA 140
                      *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-5336137IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-3537137IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-3137137IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-164063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-2940137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1691103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MALDEKTFNY KVLRIIETDD FDIKIVLIQG LGQRSLPTPF LNKTYQLVDD PAVDDVISWS  60
EDGSAFIVWR PAEFARDLLP KYFKHNNFSS FVRQLNTYVL MGVLVQGFRK IVPDRWEFAN  120
DCFRRGEKRL LCDIHRRKSA PSSSGSGGVA SGDLGEENER LRRENSRLTR ELGQMKKLCN  180
NIFVLMSKYT DGQQTDAANA TSAAADVGNC SGESAETTAL PPPPVLELLP SCQNAPTAAD  240
LDAEDEEEKM SARLFGVCIG RKRMRHDGED RTRRGAAGGG EPGRWTRSSP PEWTVTHRTC  300
KPGPFTGPGP CTNPSAPPTG QTATAGVTTT TGPTPGELSS KKNRITPGEL GSGLRVVYWY  360
RTFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-224014220125Heat shock factor protein 1
5d5u_B3e-224013729129Heat shock factor protein 1
5d5v_B3e-224013729129Heat shock factor protein 1
5d5v_D3e-224013729129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0635420.0KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197754.11e-121heat stress transcription factor B-2b-like
SwissprotQ6Z9C83e-99HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLM7ZLV40.0M7ZLV4_TRIUA; Heat stress transcription factor B-2b
STRINGTRIUR3_31165-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.19e-54HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]