PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30934-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 372aa    MW: 41954.2 Da    PI: 8.6389
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30934-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213759323
                     ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                     C+   Cgk+F +   L++H  +H
  TRIUR3_30934-P1 37 CSydGCGKTFVDAGALRKHAHVH 59
                     78889**************9887 PP
2zf-C2H216.52.4e-056488123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     y+C+   Cgk F ++s LkrH   H
  TRIUR3_30934-P1 64 YVCHyeGCGKKFLDSSKLKRHFLIH 88
                     9********************8877 PP
3zf-C2H215.74.2e-05176201123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   Cg++F++ s L+ H r  H
  TRIUR3_30934-P1 176 HMCPypECGRRFTQESKLRAHFRAqH 201
                      689999***************99877 PP
4zf-C2H211.90.00067245270123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   C k + + + L+ H+++ H
  TRIUR3_30934-P1 245 YVCPydGCAKAYIHEYKLNLHLKKeH 270
                      99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-133161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00183559IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9283564IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-63660No hitNo description
PROSITE patternPS0002803759IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-1059101No hitNo description
Gene3DG3DSA:3.30.160.602.3E-146284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00246488IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.9216493IPR007087Zinc finger, C2H2
PROSITE patternPS0002806688IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-1085104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-9156203No hitNo description
Gene3DG3DSA:3.30.160.602.3E-10162199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0077176201IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03176206IPR007087Zinc finger, C2H2
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-8237267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-5240268No hitNo description
SMARTSM003550.012245270IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871245275IPR007087Zinc finger, C2H2
PROSITE patternPS000280247270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MPLAVIEDRL AALKSKDKEE GACTAKPDPA TEVLFLCSYD GCGKTFVDAG ALRKHAHVHG  60
ERQYVCHYEG CGKKFLDSSK LKRHFLIHTG EKNFVCPHEG CGKRESEREV QQARGRGRPR  120
QQQLVYRAKF EGRLRSVRPR PRRARCATDM KVLATAFSLD FNLKAHMKTH FADNYHMCPY  180
PECGRRFTQE SKLRAHFRAQ HEKTRQSGLQ NPGGPVINRN ALGDHPHNTA KSLVTPPVPS  240
ADRPYVCPYD GCAKAYIHEY KLNLHLKKEH PNHYSDAGAQ AGPSRGTILK NSRRSKPNLT  300
TSMPLAKIPK RSGYTVPSPA VSIPEEHQWP RKVLYEDDSE ETEEEGDNLE EGGLRYRAAS  360
GGDDDEETEE EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-25371978114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569601e-140AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149431.10.0uncharacterized zinc finger protein At4g06634 isoform X1
TrEMBLM8A0M70.0M8A0M7_TRIUA; Uncharacterized protein
STRINGTRIUR3_30934-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.34e-81C2H2 family protein