![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_30486-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 313aa MW: 34276 Da PI: 7.862 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.3 | 2.2e-32 | 209 | 265 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF TRIUR3_30486-P1 209 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 265 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-35 | 207 | 268 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.934 | 208 | 268 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-26 | 210 | 265 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-23 | 211 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 213 | 233 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.3E-23 | 242 | 265 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MAWGIDRGRE PCSSSSTFAV VVFKSQFTDA VSHNWLPDSR CSLVSEKISV WFCLKKHAYG 60 YGDTDTAIRI RCSTAELIDP LDPCRCNLQN TSNASISLLE SRDWRRHAAE DAGDHRADEQ 120 QKQAAAQGNQ EEAPATSIGS QAMVATPSTD YVTPYGHQEA CHAMGQIAYP TVDPFYGSLY 180 AAYGGQPMMH PPMVGMHAAA IPLPTDAIEE PVYVNAKQYN AILRRRQSRA KAESERKLIK 240 GRKPYLHESR HQHALKRARG AGGRFLNAKS DDNEEHSDSS SKDKQNGVAP RSSGQSSQSP 300 KGATSADKSG NHE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 208 | 281 | 1 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM078755 | 0.0 | KM078755.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-B5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186181.1 | 1e-146 | nuclear transcription factor Y subunit A-7-like isoform X2 | ||||
Refseq | XP_020186182.1 | 1e-146 | nuclear transcription factor Y subunit A-7-like isoform X2 | ||||
TrEMBL | M7ZU21 | 0.0 | M7ZU21_TRIUA; Nuclear transcription factor Y subunit A-7 | ||||
STRING | TRIUR3_30486-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6555 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-38 | nuclear factor Y, subunit A7 |