PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_30426-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 389aa MW: 42089.1 Da PI: 5.8611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_30426-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	207	224	1	18
EEETTTTEEESSHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkr 18 ++C+ C+ksF+r n++r TRIUR3_30426-P1 207 FVCHVCNKSFNRYNNMQR 224 89*********9988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.71E-5	336	372	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MGLRTCGAME GEHVVASPFF EWLKPPPASP SSSRSSSTFS SSSSSMASGH QEDRSSVACL 60 PLLRMLEEGK GAGGDHEHPA PAVKEEIMGS GAAGVLGPGV DLNIGLPVGG SCDDDIMEEE 120 EGQEEDDDHD CDEEEEEEMD ELKPTHGACK VEAEEKEEHG EPVVSVEGTN SVSMPEFGVV 180 GAEGGVPMGC EYWIPTPAQI LVGPVQFVCH VCNKSFNRYN NMQRSEDLSP IPTPPNGPVE 240 VEPDLSNTRH FPNGIAGVWC LNGTQGSSPR SSKANQVSIY SKEKMHMWGH GREYRKGPES 300 LKGTQTLALL KLPCYCCAAG CRNSVAHPRA RPLKDFRTLQ THYKRKHGAR PFRCRRCAKP 360 FAVKGDWRTH EKNCGKRCRT VGAAGSAIS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MGLRTCGAME GEHVVASPFF EWLKPPPASP SSSRSSSTFS SSSSSMASGH QEDRSSVACL  60
PLLRMLEEGK GAGGDHEHPA PAVKEEIMGS GAAGVLGPGV DLNIGLPVGG SCDDDIMEEE  120
EGQEEDDDHD CDEEEEEEMD ELKPTHGACK VEAEEKEEHG EPVVSVEGTN SVSMPEFGVV  180
GAEGGVPMGC EYWIPTPAQI LVGPVQFVCH VCNKSFNRYN NMQRSEDLSP IPTPPNGPVE  240
VEPDLSNTRH FPNGIAGVWC LNGTQGSSPR SSKANQVSIY SKEKMHMWGH GREYRKGPES  300
LKGTQTLALL KLPCYCCAAG CRNSVAHPRA RPLKDFRTLQ THYKRKHGAR PFRCRRCAKP  360
FAVKGDWRTH EKNCGKRCRT VGAAGSAIS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182641.1	1e-151	protein TRANSPARENT TESTA 1-like
TrEMBL	M8AGA9	0.0	M8AGA9_TRIUA; Protein TRANSPARENT TESTA 1
STRING	TRIUR3_30426-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	3e-54	WIP domain protein 4