PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29692-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 19060.2 Da PI: 6.6142 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r H TRIUR3_29692-P1 111 HECPFCFRVFSSGQALGGHKRAH 133 79************999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.2E-9 | 64 | 89 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-10 | 110 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.224 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSLVMLSRDS WTRSRSEPEP RWASEAEQNN DGTKVFDEDE DGPDVAGEAY YAEATPVHVH 60 PRARHQCGAC KKVFRSYQAL GGHRASVKKG KGGCVPPPAG KACRADAPIV HECPFCFRVF 120 SSGQALGGHK RAHMPSPSPA KCGDSFGSFD LNVPAAFDDD FELSAVYDAE FGSVRQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368922 | 1e-165 | AK368922.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2082F22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195773.1 | 1e-116 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A3B5Y014 | 1e-125 | A0A3B5Y014_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446IZA0 | 1e-125 | A0A446IZA0_TRITD; Uncharacterized protein | ||||
TrEMBL | M7YTG2 | 1e-127 | M7YTG2_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_29692-P1 | 1e-128 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11214 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 9e-24 | C2H2-like zinc finger protein |