PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29318-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 181aa    MW: 21086.7 Da    PI: 7.2746
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29318-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.6e-0972953053
                     HHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox 30 reeLAkklgLterqVkvWFqNrRa 53
                      ++L+++lg++ +qVk+WFqN+R+
  TRIUR3_29318-P1 72 QKDLSERLGMSAQQVKFWFQNKRT 95
                     579********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.4E-67295IPR001356Homeobox domain
SuperFamilySSF466894.71E-672104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-67295IPR009057Homeodomain-like
PROSITE profilePS500719.66972100IPR001356Homeobox domain
CDDcd000860.001087394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGGEWLQYNS GVHNEFDLFM TSKHNHLFQD NHSDEMDGLL EATTVVGNTD NANIVAVDHG  60
NNDGETHNEK LQKDLSERLG MSAQQVKFWF QNKRTFSKGK MQRRETQNRW VENERLKTER  120
QAIMLAMQNK TCLKCRGVMV QTQDTSEHQR LYTENMRLKE ELLHATAYLK EGLRRNGMSL  180
P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-102HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201140.11e-122homeobox-leucine zipper protein MERISTEM L1-like
TrEMBLM7YPS81e-132M7YPS8_TRIUA; Homeobox-leucine zipper protein ROC4
STRINGTRIUR3_29318-P11e-133(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16772512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.16e-18homeodomain GLABROUS 1