PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28877-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 623aa    MW: 70084 Da    PI: 7.0253
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28877-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.8e-115366023199
                      .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      ++   +tl+   ++++W+ ++     ++ ++l+++W +Fv +n++++gD+++F  ++  ++ +++v+++r+
  TRIUR3_28877-P1 536 NG--AVTLQMpGKSEKWRPRF--FIEKDNCMLAGNWLDFVCDNQVQVGDICIFVPEKGgERSTFTVHIIRA 602
                      33..45555534679******..66667799***********************9977699999***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-15495603IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-15495602IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-13502601No hitNo description
PROSITE profilePS508639.587503603IPR003340B3 DNA binding domain
PfamPF023629.2E-9535602IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MADEAAAASS MQAAAAAALA SLHLPPPGLT ETDNQDRKIF GRGARIKRKA KRKWGFVGGE  60
AGAVDSGGLR PRLSHRRSTC RGGVGSMDEV LHGEVGIRSR FSAGRIREIM RGLTPRQQGY  120
VAKYGFEHFN RIGAFSVHEP LTEWIMGKIN PPFSEFRINA DKTIVFSKPL VQKILGVPTG  180
GRPFVLHGQK SDKIKELRDL YLNNGLRATI PHCVSLLKNN EDEESFMRTC LLIALAAVLT  240
PTTGNTIDLD YLWAFEDMSK VHDLDWAGHI TEHLMDEVQK FQYKSREEKM RDFWVGGCLP  300
LLTLWQWCAS VKLIIAYMDH LDLPRGRIVD HEINYSVPRI CHVSKDDFQF AAIADLHRQH  360
FKFATFGILP FRDRTPYTDN PVTDTEVAAD DLRILSNDQV LSGQWELVEV HEQKIDELVK  420
ETQPEALGFA EASIDHFRLG RTDIGSNQVE DSAREYESSE SDDHLTPPEA DYGVIFRSYL  480
SGTQMERVNM LIHKIKPETI VFVATMRKCD VQLPTPLLII SKERSLAAAA HFPHENGAVT  540
LQMPGKSEKW RPRFFIEKDN CMLAGNWLDF VCDNQVQVGD ICIFVPEKGG ERSTFTVHII  600
RAEATHRRGV KRVRSSLDSP GGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201512.10.0uncharacterized protein LOC109787361
TrEMBLT1NE800.0T1NE80_TRIUA; Uncharacterized protein
STRINGTRIUR3_28877-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP492169